| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3763 |
|---|
| Symbol | |
|---|
| ID | 5105758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4146404 |
|---|
| End bp | 4149061 |
|---|
| Gene Length | 2658 bp |
|---|
| Protein Length | 885 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640505018 |
|---|
| Product | CRISPR-associated helicase Cas3 family protein protein |
|---|
| Protein accession | YP_001189243 |
|---|
| Protein GI | 146308778 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0421659 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGAT TCGTCGATTT AAGCGACCGC GCCCGCCGGC TCTGGGCCAA GAGTGGTGAT
GGCTTCGGTC ACGGTGTGTT GGCCCATTTG CTGGATGTAG CCGCGGTTGC CGAGCGGATG
CTGGCCCACG AGCCTGCAAG TACGTTGGAT TGGGCGGCCC AGGCGCTGGG GCTGGAACGC
GAGCATGTGG CGCGTTGGGT CGCCTGCCTA GTGGGGCTGC ATGACTTTGG CAAGGCTATC
CCCGGCTTTC AGGACAAGTG GCTTGAGGGA CGGCAAACCG ACGAGACACT GGGGCTGGCC
TTTCCCGCTC GCTCGCTGGG CGTTACCGAT CACGCCTGCG CGAGTGCGGC GCTGCTCTGG
GAGCATCTGC CGCGTCGGGG TGTGCGGCAT ATGCTGTGGA TTCGCCACGC CTTGCAGGCC
ATCAGCGCCC ATCATGGTTA CAACTTCAAT CAGACGGAAC TCAACCGGGG CAAGCCATCG
TTCGAGCCAC CGGCCTGGAA CGAGGCGCGC GGGGAACTTT TCGAGGCCTA CTGGGGCGTG
CTGGCGCCAC CGGGGGCGCC GCAGCTTGAG GAGCTGGCGC AGCCAGCGGT GCAGTGGCTG
GCCGGACTGA CCAGCGTGGC CGATTGGATC GGCTCAAACC CCGAGTGGTT TCCATTGGGC
GAGCGCCATG CGCTGCTCGC CGAACACCAT GCCGACGCCT GCTCGCGCGC TGATCAGGCC
TTGCAGCAGA TAGGTTGGCG GCCCTTTCAG TCGCTGCTGA CTGCGCCGTC CACGACGGAT
CGCCTGATCG GGCAGATCGT CCAGCGTCCG GAGCTGACGG CGCGCCCCCT GCAATCCGAG
GCTGACCGCC TACTCGAAGG GGTGCGAGGC CCGGCGCTGC TGCTGGTCGA GGCGCCAATG
GGCGAGGGCA AGACCGAACT GGCCTTCCTC GCCCATCTGC GTCTGCAAGC GGCCAACCAG
CATCGTGGCC TCTATGTGGC GCTGCCAACC CAGGCCACGG GCAATGCGCT GTTCAGTCGC
GCGCTGACCT TTCTCCACGG CTTCGCCGCC GACACCGCGC TGGATGTGCA ACTGGTGCAT
GGCGGTGCTG CGCTCAACGA GCAGGTGCTG AAGCTGCGTG GCATTTATGG CGCATCCGGC
GACAGCGTGG CCTCGTCTGC CTGGTTCTCT CAGCGCCGCC GTCCGTTGCT GTCGCCCTAT
GGCGTCGGCA CCGTGGATCA GGCGCTGTTC GCCACACTCA ACGTCAAACA CCACTTTGTG
CGCCTGTGGG GGTTGAGCAA CCGGGTGGTG GTGCTCGATG AAGTGCATGC CTACGACACT
TACACCAGCG GACTGATCGA AGCACTGCTG CGCTGGCTCA AGGCGCTGGG CAGTTCGGTG
GTGCTGATGA GCGCCACCTT GCCGGTACCG CGCCGCGATG CGTTGCTGCG CGCCTGGGGC
GTGGAGGTGG ACGAGGTACC CGAGCTGGCC TATCCGCGCC TGCTGCTGGC CGACGAGCGC
GGGTTGCAGG GCGCTACTTG CGACTCACGG CCGTTGTCGC CGATCCAGCT ACAGGCCGTG
GCGGAGGATC TCGACAGCCT CACCGCCAAG GCCCAGCTTC TCGTTCAGCA GGGCGGCTGT
GGGGCGCTGA TCGTCAATAC CGTGGATCGT GCGCAGAACG TTTACCTCAA GCTCAAGGCC
GAGTTGGGCG ATGCGATGCC TCTGCTGCTG TTTCATGCGC GCTTCCCGGC AGATCAGCGC
AGCGAGCAGG AGCGGGCGGT ACTGGCGCGC TTCGGTCAGG GCGGAGAGCG ACCTGCCAAG
GCATTGCTGA TCGCCACTCA GGTGGCCGAG CAGAGCCTGG ATATCGACTT CGATTTCATG
CTCACCGACC TGGCACCGGT GGACTTGATC CTGCAGCGTG CCGGCCGTTT GCACCGCCAT
CAGCGCGAGC GCCCCGAAGC GCATCGGCAG GCGATCTTGT ATGTAGCAGG TCTCGACCCC
GCTGCATTGC CCGACCTCAA GAGCACCGCC TGGGAATACG TCTACGAGCC CTACATCCTC
GGCCGCACCT GGGCGTTGCT ATCGCGCGAA CAGGAACTGC ATCTGCCGCA CGATATTGAC
CGGCTGGTGC AGGCGGTTTA CGACGGCGAG AATCTGCCGG CCGATCTCGC CGAGACTGAT
CGAGCCTTTA TCGAAGATCA TGCCTATGGC GCTTACCTGG GTAAGCGGCA GACCGAACGG
ATGATGGCGC TCAACGTCGC CGTCGATCCG CAGGCCGAGC CGCAGAACGC CTACACCCAG
AAGAATCGGG GCTATGAGGA GGGGGAGGAA GGCCTGGGCC TACCCAACTA CACCCGTCTG
GGCGATGACT CCGTGACCCT GATTCCCGTG CATCAGGTGC CCGGTGGCTG GAGCCTGACG
CCGGGCGGTG ACGCCTTCGA CCCCGATCAG CTACTGTCCA ATGCCCTTGC CAAGCAACTC
CACGTCCGGC AGCTGAAGAC GTCGCGCCCA GCGCTGGTCA AGCATGCGCT GGGCGAAGAT
TCACCCCGCG CATTCAGCGA GCATCCGCTG CTGCGTCATC TCAAACCGCT GCTGCTTACC
GATGGCTACC TACAGATAGG TCGTTTGACG GTGCGTCTGG ATGATGAGTT GGGGCTGGTC
TACCAGCGCG ACGCTTAG
|
|---|
| Protein sequence | MKGFVDLSDR ARRLWAKSGD GFGHGVLAHL LDVAAVAERM LAHEPASTLD WAAQALGLER
EHVARWVACL VGLHDFGKAI PGFQDKWLEG RQTDETLGLA FPARSLGVTD HACASAALLW
EHLPRRGVRH MLWIRHALQA ISAHHGYNFN QTELNRGKPS FEPPAWNEAR GELFEAYWGV
LAPPGAPQLE ELAQPAVQWL AGLTSVADWI GSNPEWFPLG ERHALLAEHH ADACSRADQA
LQQIGWRPFQ SLLTAPSTTD RLIGQIVQRP ELTARPLQSE ADRLLEGVRG PALLLVEAPM
GEGKTELAFL AHLRLQAANQ HRGLYVALPT QATGNALFSR ALTFLHGFAA DTALDVQLVH
GGAALNEQVL KLRGIYGASG DSVASSAWFS QRRRPLLSPY GVGTVDQALF ATLNVKHHFV
RLWGLSNRVV VLDEVHAYDT YTSGLIEALL RWLKALGSSV VLMSATLPVP RRDALLRAWG
VEVDEVPELA YPRLLLADER GLQGATCDSR PLSPIQLQAV AEDLDSLTAK AQLLVQQGGC
GALIVNTVDR AQNVYLKLKA ELGDAMPLLL FHARFPADQR SEQERAVLAR FGQGGERPAK
ALLIATQVAE QSLDIDFDFM LTDLAPVDLI LQRAGRLHRH QRERPEAHRQ AILYVAGLDP
AALPDLKSTA WEYVYEPYIL GRTWALLSRE QELHLPHDID RLVQAVYDGE NLPADLAETD
RAFIEDHAYG AYLGKRQTER MMALNVAVDP QAEPQNAYTQ KNRGYEEGEE GLGLPNYTRL
GDDSVTLIPV HQVPGGWSLT PGGDAFDPDQ LLSNALAKQL HVRQLKTSRP ALVKHALGED
SPRAFSEHPL LRHLKPLLLT DGYLQIGRLT VRLDDELGLV YQRDA
|
|---|
| |