| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3606 |
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| Symbol | truB |
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| ID | 5106153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3978505 |
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| End bp | 3979425 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640504859 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_001189086 |
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| Protein GI | 146308621 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.825741 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGCAGG TCAAACGTAT TCGCCGCAAG GTCGACGGCA TCATCCTGCT CGACAAGCCG
CGCGGCTTTA CCTCCAACGC GGCCCTGCAG AAGGTGCGCT GGCTGCTCAA TGCAGAGAAG
GCCGGGCATA CCGGCAGCCT CGATCCGCTG GCAACCGGCG TGCTGCCGCT GTGTTTCGGC
GAGGCGACCA AGTTCTCCCA GTACCTGCTC GATGCCGACA AGGGCTACGA GACCGTGGCG
CAACTGGGCG TGACCACCAC CACCGGCGAC GCCGAAGGTG AGGTGCTCGA GCGACGCCCG
GTGACCGTTG GTCGCCCTGA AATCGAGGCC CTGTTGCCGC GTTTTCGTGG AGAAATCAAA
CAGATACCTC CAATGTATTC GGCCCTGAAG AAGGACGGCC AGCCGCTGTA CAAGCTGGCC
CGTGCAGGCG AAGTAGTGGA GCGCGAAGCG CGTTCTGTTA CTATTGCGCG CCTGGAATTG
CTGGCCCTCG AAGGCGAGCA GGCGCGTCTG TCCGTGGACT GCAGCAAGGG GACCTACATT
CGTACCCTGG TCGAGGACCT CGGCCAATTG CTCGGTTGTG GCGCACACGT CGCCGAACTG
CGTCGAACCA AGGCCGGTCC CTTCGAGCTG GCGCGTACCG TGACCCTGGA AGAGCTGGAG
GCGGTGCACG CCGAAGGTGG CAGCGAAGCG CTTGATCGCT TCCTGCAGCC GGTCGACAGC
GGTTTGCAGG ATTGGCCGCT GCTGCAGTTT TCCGAGCACA GTGCGTTCTA CTGGTTGCAA
GGACAACCGG TACGGGCACC GGAAGCGCCG AAGTTCGGCA TGGTGCGCGT GCAGGATCAC
AATGGTCGCT TCATCGGCAT CGGTGAAGTG AGCGACGATG GGCGTATTGC CCCGCGTCGA
TTGATTTATA CCGGTGCGTA G
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| Protein sequence | MAQVKRIRRK VDGIILLDKP RGFTSNAALQ KVRWLLNAEK AGHTGSLDPL ATGVLPLCFG
EATKFSQYLL DADKGYETVA QLGVTTTTGD AEGEVLERRP VTVGRPEIEA LLPRFRGEIK
QIPPMYSALK KDGQPLYKLA RAGEVVEREA RSVTIARLEL LALEGEQARL SVDCSKGTYI
RTLVEDLGQL LGCGAHVAEL RRTKAGPFEL ARTVTLEELE AVHAEGGSEA LDRFLQPVDS
GLQDWPLLQF SEHSAFYWLQ GQPVRAPEAP KFGMVRVQDH NGRFIGIGEV SDDGRIAPRR
LIYTGA
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