Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3588 |
Symbol | |
ID | 5106135 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 3954574 |
End bp | 3957528 |
Gene Length | 2955 bp |
Protein Length | 984 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640504841 |
Product | two-component sensor kinase CbrA |
Protein accession | YP_001189068 |
Protein GI | 146308603 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.883039 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGACGA GCTTTAGCCT GAGCGAACTG ATCCTGATCA GCGCCGGCTA TCTGCTGGTG CTGTTCGGCG TCGCCTGGGT CAGCGAACAC GGCCTGATCC CGCGCTGGAT CATCCGCCAT CCGCTGACCT ATACCCTGTC ACTGGGCGTC TACGCCAGCG CCTGGGCCTT CTACGGCACG GTGGGCCTGG CCTATCAGTA CGGCTACGGC TTTCTTGCCA GCTACCTCGG GGTATCCGGC GCCTTCCTGC TGGCACCGGT GCTGCTTTAT CCGATCCTGC GCATCACCCG CACCTACCAG CTGTCGTCGC TGGCCGACCT GTTCGCCTTC CGCTTTCGCA GCACCTGGGC AGGCGTGCTG ACCACTCTGT TCATGCTGAT CGGCGTACTG CCGCTGCTGG CCCTGCAGAT TCAGGCGGTG GCCGACTCCA TCGGCATCCT CAGCCGCGAG CCGCTGCAGG AGAAGGTGGC GCTGAGCTAC TGCGGGCTGA TCATCCTCTT CACCATTCTC TTCGGCGCAC GCCATATCGC CACGCGCGAG AAACACGAGG GCCTGGTGTT CGCCATCGCC TTCGAATCGC TGGTCAAGCT GGTCGCCCTC GGCGTCATCG GCTGGTATGC GCTGTACCAG GTGTTCGGCG GCCCACGCGA GCTGGAACTG TGGCTGGTGC AGAACCAGGC AGCTTTGGCC ACGCTGCACA CGCCGCTGCA GGAAGGTCCG TGGCGCACCC TGCTGCTGGT GTTCTTCGCC TCGGCCATCG TCATGCCTCA CATGTATCAC ATGACCTTCA CCGAGAACCT CAATCCGCGC GCCATGGTCA GCGCCAGCTG GGGCCTGCCG CTGTTCCTGC TGCTGATGAG CCTGGCCGTG CCGCTGATCC TCTGGGCCGG CCTCAAGCTG GGCGCCACCA CCAACCCGGA ATACTTCACC CTGGGTCTGG GCATCGCGGT GAACAGCGAG GCGCTGGCGC TGCTCGCCTA CGTCGGCGGC CTGTCGGCCT CCAGCGGCCT GATCATCGTC AGCACCCTGG CGCTATCCGG CATGGCGCTG AACCACCTGG TGCTGCCGCT GTACCAGCCA CCGGCCGAAG GCAACATCTA CCGCTGGCTG AAGTGGACCC GCCGCGCGCT GATCGCCTTC ATCATCATGG CCGGTTACGG CTTCTACCTG CTGCTCGGTG CCCAGCAGGA CCTGGCCAAC CTGGGCATCG TCGCCTTCGT CGCCACCCTG CAGTTCCTGC CTGGCGTGCT CTCGGTGCTG TACTGGCAGA CGGCCAATCG CCGCGGTTTC CTCGCCGGGC TGCTGGCCGG AATCAGCGTC TGGGCGCTGA CCATGCTGCT GCCGCTGCTG GGCAATCTGG AAGGCTTCTA CCTGCCGCTG TTCAACGTGG TCTACGTGCT CGACGACGCC AGCTGGCACC TGGCAGCAAT CGCCTCGCTG GCCGCCAACG TGCTGGTGTT CACCCTGGTT TCGCTGTTCA CCGAAGCCAG CCCCGAGGAA AAGAGCGCCG CCGAAGCCTG CGCGGTGGAC AACGTGCGCC GCCCGCAGCG CCGCGAACTG GTGGCGGTAT CGCCACAGGA CTTCGCCGCC CAGCTGGCCA AACCGCTGGG CGCCAAGACC GCCCAGCGCG AGGTGGAGCA GGCCCTGCGC GACCTGCACC TGCCCTTCGA CGAGGGCCGC CCCTACGCGC TGCGTCGCCT GCGCGACCGC ATCGAAGCCA ACCTCTCCGG CCTGATGGGA CCGAGCGTGG CGCAGGACAT CGTCGAGACC TTCCTGCCCT ACAAATCCGG CAGCGAGGGC TACGTCACCG AGGACATCCA CTTCATCGAA AGCCGCCTGG AGGATTACCA GTCGCGCCTC ACCGGCCTGG CCGCCGAGCT CGATGCGCTG CGCCGCTACC ACCGCCAGAC CCTGCAGGAA CTGCCGATGG GCGTGTGCTC GCTGGCCAAG GATCAGGAGA TCCTGATGTG GAACCGGGCG ATGGAGGAAC TCACCGAGAT TCCCGCGCAG CGCATCGTCG GCTCGCGCCT GTCGGCCCTG GCCGAGCCCT GGCAGAGCCT GCTGCAGGAT TTCATCGAGC GTCCCGATCA GCACCTGCAC AAGCAGCACC TGGCCGTCGA TGGCCAGATC CGCTGGCTCA ACCTGCACAA GGCCGCCATC GACGAGCCGC TGGCCCCCGG CAATAGCGGC CTGGTGCTGC TGGTCGAGGA CCAGACCGAA ACCCAGATGC TCGAAGACAA GCTGGTGCAC TCCGAGCGCC TGGCCAGCAT CGGCCGCCTG GCTGCCGGCG TGGCCCACGA GATCGGCAAT CCCATCACCG GCATCGCCTG CCTGGCGCAG AACCTGCGTG AAGAGCGCGA GACCGACGCC GAGCTGGCCG AAATCAGCGG GCAGATACTG GAGCAGACCA AGCGCGTCTC GCGCATCGTC CAGTCGCTGA TGAGCTTCGC CCACTCCGGC GGCCACCAGC ATAGCGACGA GCCGGTGTGC CTGGCCGACG TGGCGCAGGA CGCCATCGGC CTGCTGTCGC TGAACAAGCG CAACTTCGAG ATCCAGTTCT ACAACCTTTG CGACCCGGAG CATTGGGCCG AGGGCGATCC GCAGCGCCTG GCGCAGGTGT TGATCAACCT GCTGTCCAAC GCCCGCGATG CCTCGCCGCC CGGCGGCGCC ATTCGCGTGC GCAGCGAGGC CAGCGAACAT ACCGTCGACC TGATCGTCGA GGACGAAGGC AGCGGCATTC CCAAGGCGAT CATCGATCGT CTGTTCGAGC CGTTCTTCAC CACCAAGGAC CCCGGCGAGG GGACCGGCCT GGGCCTCGCG CTGGTCTATT CGATCGTGGA AGAGCATTAT GGACAAATAA CAATCGACAG CCCGGCCGAC CCCGAGCGCC AACTGGGCAC TCGAATCAGG GTCACCCTGC CAAGGCATGT CGAGGCGACG TCCGTAGCGA TGTAA
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Protein sequence | MLTSFSLSEL ILISAGYLLV LFGVAWVSEH GLIPRWIIRH PLTYTLSLGV YASAWAFYGT VGLAYQYGYG FLASYLGVSG AFLLAPVLLY PILRITRTYQ LSSLADLFAF RFRSTWAGVL TTLFMLIGVL PLLALQIQAV ADSIGILSRE PLQEKVALSY CGLIILFTIL FGARHIATRE KHEGLVFAIA FESLVKLVAL GVIGWYALYQ VFGGPRELEL WLVQNQAALA TLHTPLQEGP WRTLLLVFFA SAIVMPHMYH MTFTENLNPR AMVSASWGLP LFLLLMSLAV PLILWAGLKL GATTNPEYFT LGLGIAVNSE ALALLAYVGG LSASSGLIIV STLALSGMAL NHLVLPLYQP PAEGNIYRWL KWTRRALIAF IIMAGYGFYL LLGAQQDLAN LGIVAFVATL QFLPGVLSVL YWQTANRRGF LAGLLAGISV WALTMLLPLL GNLEGFYLPL FNVVYVLDDA SWHLAAIASL AANVLVFTLV SLFTEASPEE KSAAEACAVD NVRRPQRREL VAVSPQDFAA QLAKPLGAKT AQREVEQALR DLHLPFDEGR PYALRRLRDR IEANLSGLMG PSVAQDIVET FLPYKSGSEG YVTEDIHFIE SRLEDYQSRL TGLAAELDAL RRYHRQTLQE LPMGVCSLAK DQEILMWNRA MEELTEIPAQ RIVGSRLSAL AEPWQSLLQD FIERPDQHLH KQHLAVDGQI RWLNLHKAAI DEPLAPGNSG LVLLVEDQTE TQMLEDKLVH SERLASIGRL AAGVAHEIGN PITGIACLAQ NLREERETDA ELAEISGQIL EQTKRVSRIV QSLMSFAHSG GHQHSDEPVC LADVAQDAIG LLSLNKRNFE IQFYNLCDPE HWAEGDPQRL AQVLINLLSN ARDASPPGGA IRVRSEASEH TVDLIVEDEG SGIPKAIIDR LFEPFFTTKD PGEGTGLGLA LVYSIVEEHY GQITIDSPAD PERQLGTRIR VTLPRHVEAT SVAM
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