Gene Pmen_3588 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3588 
Symbol 
ID5106135 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3954574 
End bp3957528 
Gene Length2955 bp 
Protein Length984 aa 
Translation table11 
GC content66% 
IMG OID640504841 
Producttwo-component sensor kinase CbrA 
Protein accessionYP_001189068 
Protein GI146308603 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.883039 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGACGA GCTTTAGCCT GAGCGAACTG ATCCTGATCA GCGCCGGCTA TCTGCTGGTG 
CTGTTCGGCG TCGCCTGGGT CAGCGAACAC GGCCTGATCC CGCGCTGGAT CATCCGCCAT
CCGCTGACCT ATACCCTGTC ACTGGGCGTC TACGCCAGCG CCTGGGCCTT CTACGGCACG
GTGGGCCTGG CCTATCAGTA CGGCTACGGC TTTCTTGCCA GCTACCTCGG GGTATCCGGC
GCCTTCCTGC TGGCACCGGT GCTGCTTTAT CCGATCCTGC GCATCACCCG CACCTACCAG
CTGTCGTCGC TGGCCGACCT GTTCGCCTTC CGCTTTCGCA GCACCTGGGC AGGCGTGCTG
ACCACTCTGT TCATGCTGAT CGGCGTACTG CCGCTGCTGG CCCTGCAGAT TCAGGCGGTG
GCCGACTCCA TCGGCATCCT CAGCCGCGAG CCGCTGCAGG AGAAGGTGGC GCTGAGCTAC
TGCGGGCTGA TCATCCTCTT CACCATTCTC TTCGGCGCAC GCCATATCGC CACGCGCGAG
AAACACGAGG GCCTGGTGTT CGCCATCGCC TTCGAATCGC TGGTCAAGCT GGTCGCCCTC
GGCGTCATCG GCTGGTATGC GCTGTACCAG GTGTTCGGCG GCCCACGCGA GCTGGAACTG
TGGCTGGTGC AGAACCAGGC AGCTTTGGCC ACGCTGCACA CGCCGCTGCA GGAAGGTCCG
TGGCGCACCC TGCTGCTGGT GTTCTTCGCC TCGGCCATCG TCATGCCTCA CATGTATCAC
ATGACCTTCA CCGAGAACCT CAATCCGCGC GCCATGGTCA GCGCCAGCTG GGGCCTGCCG
CTGTTCCTGC TGCTGATGAG CCTGGCCGTG CCGCTGATCC TCTGGGCCGG CCTCAAGCTG
GGCGCCACCA CCAACCCGGA ATACTTCACC CTGGGTCTGG GCATCGCGGT GAACAGCGAG
GCGCTGGCGC TGCTCGCCTA CGTCGGCGGC CTGTCGGCCT CCAGCGGCCT GATCATCGTC
AGCACCCTGG CGCTATCCGG CATGGCGCTG AACCACCTGG TGCTGCCGCT GTACCAGCCA
CCGGCCGAAG GCAACATCTA CCGCTGGCTG AAGTGGACCC GCCGCGCGCT GATCGCCTTC
ATCATCATGG CCGGTTACGG CTTCTACCTG CTGCTCGGTG CCCAGCAGGA CCTGGCCAAC
CTGGGCATCG TCGCCTTCGT CGCCACCCTG CAGTTCCTGC CTGGCGTGCT CTCGGTGCTG
TACTGGCAGA CGGCCAATCG CCGCGGTTTC CTCGCCGGGC TGCTGGCCGG AATCAGCGTC
TGGGCGCTGA CCATGCTGCT GCCGCTGCTG GGCAATCTGG AAGGCTTCTA CCTGCCGCTG
TTCAACGTGG TCTACGTGCT CGACGACGCC AGCTGGCACC TGGCAGCAAT CGCCTCGCTG
GCCGCCAACG TGCTGGTGTT CACCCTGGTT TCGCTGTTCA CCGAAGCCAG CCCCGAGGAA
AAGAGCGCCG CCGAAGCCTG CGCGGTGGAC AACGTGCGCC GCCCGCAGCG CCGCGAACTG
GTGGCGGTAT CGCCACAGGA CTTCGCCGCC CAGCTGGCCA AACCGCTGGG CGCCAAGACC
GCCCAGCGCG AGGTGGAGCA GGCCCTGCGC GACCTGCACC TGCCCTTCGA CGAGGGCCGC
CCCTACGCGC TGCGTCGCCT GCGCGACCGC ATCGAAGCCA ACCTCTCCGG CCTGATGGGA
CCGAGCGTGG CGCAGGACAT CGTCGAGACC TTCCTGCCCT ACAAATCCGG CAGCGAGGGC
TACGTCACCG AGGACATCCA CTTCATCGAA AGCCGCCTGG AGGATTACCA GTCGCGCCTC
ACCGGCCTGG CCGCCGAGCT CGATGCGCTG CGCCGCTACC ACCGCCAGAC CCTGCAGGAA
CTGCCGATGG GCGTGTGCTC GCTGGCCAAG GATCAGGAGA TCCTGATGTG GAACCGGGCG
ATGGAGGAAC TCACCGAGAT TCCCGCGCAG CGCATCGTCG GCTCGCGCCT GTCGGCCCTG
GCCGAGCCCT GGCAGAGCCT GCTGCAGGAT TTCATCGAGC GTCCCGATCA GCACCTGCAC
AAGCAGCACC TGGCCGTCGA TGGCCAGATC CGCTGGCTCA ACCTGCACAA GGCCGCCATC
GACGAGCCGC TGGCCCCCGG CAATAGCGGC CTGGTGCTGC TGGTCGAGGA CCAGACCGAA
ACCCAGATGC TCGAAGACAA GCTGGTGCAC TCCGAGCGCC TGGCCAGCAT CGGCCGCCTG
GCTGCCGGCG TGGCCCACGA GATCGGCAAT CCCATCACCG GCATCGCCTG CCTGGCGCAG
AACCTGCGTG AAGAGCGCGA GACCGACGCC GAGCTGGCCG AAATCAGCGG GCAGATACTG
GAGCAGACCA AGCGCGTCTC GCGCATCGTC CAGTCGCTGA TGAGCTTCGC CCACTCCGGC
GGCCACCAGC ATAGCGACGA GCCGGTGTGC CTGGCCGACG TGGCGCAGGA CGCCATCGGC
CTGCTGTCGC TGAACAAGCG CAACTTCGAG ATCCAGTTCT ACAACCTTTG CGACCCGGAG
CATTGGGCCG AGGGCGATCC GCAGCGCCTG GCGCAGGTGT TGATCAACCT GCTGTCCAAC
GCCCGCGATG CCTCGCCGCC CGGCGGCGCC ATTCGCGTGC GCAGCGAGGC CAGCGAACAT
ACCGTCGACC TGATCGTCGA GGACGAAGGC AGCGGCATTC CCAAGGCGAT CATCGATCGT
CTGTTCGAGC CGTTCTTCAC CACCAAGGAC CCCGGCGAGG GGACCGGCCT GGGCCTCGCG
CTGGTCTATT CGATCGTGGA AGAGCATTAT GGACAAATAA CAATCGACAG CCCGGCCGAC
CCCGAGCGCC AACTGGGCAC TCGAATCAGG GTCACCCTGC CAAGGCATGT CGAGGCGACG
TCCGTAGCGA TGTAA
 
Protein sequence
MLTSFSLSEL ILISAGYLLV LFGVAWVSEH GLIPRWIIRH PLTYTLSLGV YASAWAFYGT 
VGLAYQYGYG FLASYLGVSG AFLLAPVLLY PILRITRTYQ LSSLADLFAF RFRSTWAGVL
TTLFMLIGVL PLLALQIQAV ADSIGILSRE PLQEKVALSY CGLIILFTIL FGARHIATRE
KHEGLVFAIA FESLVKLVAL GVIGWYALYQ VFGGPRELEL WLVQNQAALA TLHTPLQEGP
WRTLLLVFFA SAIVMPHMYH MTFTENLNPR AMVSASWGLP LFLLLMSLAV PLILWAGLKL
GATTNPEYFT LGLGIAVNSE ALALLAYVGG LSASSGLIIV STLALSGMAL NHLVLPLYQP
PAEGNIYRWL KWTRRALIAF IIMAGYGFYL LLGAQQDLAN LGIVAFVATL QFLPGVLSVL
YWQTANRRGF LAGLLAGISV WALTMLLPLL GNLEGFYLPL FNVVYVLDDA SWHLAAIASL
AANVLVFTLV SLFTEASPEE KSAAEACAVD NVRRPQRREL VAVSPQDFAA QLAKPLGAKT
AQREVEQALR DLHLPFDEGR PYALRRLRDR IEANLSGLMG PSVAQDIVET FLPYKSGSEG
YVTEDIHFIE SRLEDYQSRL TGLAAELDAL RRYHRQTLQE LPMGVCSLAK DQEILMWNRA
MEELTEIPAQ RIVGSRLSAL AEPWQSLLQD FIERPDQHLH KQHLAVDGQI RWLNLHKAAI
DEPLAPGNSG LVLLVEDQTE TQMLEDKLVH SERLASIGRL AAGVAHEIGN PITGIACLAQ
NLREERETDA ELAEISGQIL EQTKRVSRIV QSLMSFAHSG GHQHSDEPVC LADVAQDAIG
LLSLNKRNFE IQFYNLCDPE HWAEGDPQRL AQVLINLLSN ARDASPPGGA IRVRSEASEH
TVDLIVEDEG SGIPKAIIDR LFEPFFTTKD PGEGTGLGLA LVYSIVEEHY GQITIDSPAD
PERQLGTRIR VTLPRHVEAT SVAM