| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3556 |
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| Symbol | |
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| ID | 5106103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3920910 |
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| End bp | 3921869 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640504809 |
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| Product | transcriptional regulator |
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| Protein accession | YP_001189036 |
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| Protein GI | 146308571 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.253425 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCACTG TCGCCCTCTA TGTCTGCCCG CAAACCATCT GCTCGAGCCT GAGCATGGCA
CAGGATGCCT TCAGTCTCGC CAATCGGCTG GCGGGCACAC CGCGCTTTCA CCTGCAGCGC
TTCAGCCTCG ATGGCCAGCC GGTGCAACTG GAGTTCGCCC AGGTTCAGGT CAACGGCGGT
CTGGAGCTGG CCGAGCGGGC CGACCTGCTG ATCCTGCCAG CCACCGGCAG CGCCATCTCC
CGTACGCTGG AGGGCAATGC CGGCCTGCTG CCCTGGCTGG CTCGCCGCCA GCAGCAGGTG
GCAAGCCTGT GCAGCAGCGC CTTTCTGCTG GCGGCCGCCG GGCTGCTCGA CGGTCGCCAG
GCCACCACCC ACTGGGCCCT GGCCGAGACC TTTACCCGAC ATTTTCCCCG CGTGAACCTG
CGCAGCGACC TGCTGCTGAC CGAGGACGGC CCGCTGTTCT GCTCCGGCGG CGCCCAGGCG
GGGCTCGACC TGTGCCTGCA CCTGATCGCC CTGCATGGCG GCGAATGGCT GGCGCAGCAG
GTCGCCAGCG CTATGGTGGT GGAGCGTCAG CGCGGCCCGC AGTCACGCTT CGCCCCTCTA
CTACCCGCCA GCGATGACAC GACCCTGGCG CCGCTGCTCG ACTGGTTGCG CCGCCATCAT
GCCGAATCCG TCGATCTGGC CAGCCTGGCC GAGCAGGCGC ACTGCTCGCC GCGCACCCTG
CTGCGCCGCT TCAAGACCGC CACCGGGCTG ACGCCCAACG ACTACCTGCA GCGCCTGCGC
ATCGCCAACG CGCAGCAGGC GCTGGCCCGC TCCGGCGATT CGCTGGAGCG GATCGCCGCC
GCGGTCGGCT ATGCCGATCG CGCCACCTTC GCCAAGCTGT TCAAGCAGCT GTGCGGCGAG
ACGCCCGGCG CGTTTCGCAA GCGCATGCAG GGCAACGGGG CCGCACCGCC GGCCCCGTAG
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| Protein sequence | MLTVALYVCP QTICSSLSMA QDAFSLANRL AGTPRFHLQR FSLDGQPVQL EFAQVQVNGG
LELAERADLL ILPATGSAIS RTLEGNAGLL PWLARRQQQV ASLCSSAFLL AAAGLLDGRQ
ATTHWALAET FTRHFPRVNL RSDLLLTEDG PLFCSGGAQA GLDLCLHLIA LHGGEWLAQQ
VASAMVVERQ RGPQSRFAPL LPASDDTTLA PLLDWLRRHH AESVDLASLA EQAHCSPRTL
LRRFKTATGL TPNDYLQRLR IANAQQALAR SGDSLERIAA AVGYADRATF AKLFKQLCGE
TPGAFRKRMQ GNGAAPPAP
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