| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3542 |
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| Symbol | |
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| ID | 5106089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3906881 |
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| End bp | 3908095 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640504795 |
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| Product | exonuclease subunit SbcD |
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| Protein accession | YP_001189022 |
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| Protein GI | 146308557 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0420] DNA repair exonuclease |
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| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.113465 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCATCC TGCACACCTC CGACTGGCAT CTGGGCCAGC ACTTCATGGG CAAGACCCGC
CAGGCCGAGC ATCAGGCCTT CTGCGCCTGG CTGCTGGAGC AGGTCCGCAG CCATGCCGTG
GATGTGCTGC TGATCGCCGG CGACGTGTTC GACACCGGTG CGCCGCCCAG CTATGCCCGT
GAGCAGTACT ACCGCCTGGT GGTGGAGCTG CGCGACGCCG GCTGCGCGCT GGTGGTGCTC
GGCGGCAATC ACGACTCGCC GGCCATGCTC GGCGAGAGCC GCAGCCTGCT GGCGCAACTG
GGTACCCAGG TGGTGCCGGG TGTCGGTGTC GATCTCGCCG AGCAGGTGCG GGTGCTGCAT
GACCGCGAGG GTGTGCCTGG CGCCATTCTC TGCGCGGTAC CCTTTATCCG CCCGCGTGAT
GTCACGGCCA GCCAGGCCGG GCAGAGTGCG CAGGACAAGC AGCAGTCGCT GCAGCAGGCC
ATCGCCGAGC ACTACCGGGC CCTTCACCAG CTGGCGCAGC GCAAGCGCGA CAAGCTGGGC
CTGGCGCTGC CGATCATTGC CACCGGTCAC CTCACCACCG TGGGCGCCAG TGCCAGCGAG
TCGGTGCGGG AAATCTACGT CGGCAGCCTG GAGGCCTTCC CCACCAGCGC CTTCCCGCCC
GCCGATTACA TCGCCCTCGG TCATATCCAC AGGCCGCAGA AGGTCGGCGG CCTGGAGCAC
ATTCGCTACA GCGGCTCGCC CATCGCGCTG TCCTTCGATG AAGCGCGGCA GCAGAAGGAA
GTGCTACTCC TGACCTTCGG CGATGGCTCG CTGCAATCGA TCACCCCCTT GCCGGTGCCG
GTGTTTCAGC CCATGGCCAG TCTGTGCGGC TCGCTCAAGG AACTGGCCGG CGCCATCGCC
GAACAGGCCG CCCAGGGCAT GCCCGAGCGG CCTGTGTGGC TCGAGGTACA GGTCAGCAGC
GACGATTACC TGAGTGATCT GCAAAGCCGC ATCAACGCCC TGTGCGAGGG GCTGCCTGTC
GAAGTGCTAC GTATTCGCCG CGAGCGCGGC ACGGCCAGCG CGAGTCTGGC CAGCGAAGCA
CGGGAAACCC TGGATGAGCT GTCGGCAGAG GACGTCTTCT CACGCAGGCT GCAACAGGAA
ACGCTGGATG AGGACGATAG CCAGCGCTTG CAGGAACTGT ATCGGCAGGT GCTGGAAACG
CTGCCAAGAG CCTAG
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| Protein sequence | MRILHTSDWH LGQHFMGKTR QAEHQAFCAW LLEQVRSHAV DVLLIAGDVF DTGAPPSYAR
EQYYRLVVEL RDAGCALVVL GGNHDSPAML GESRSLLAQL GTQVVPGVGV DLAEQVRVLH
DREGVPGAIL CAVPFIRPRD VTASQAGQSA QDKQQSLQQA IAEHYRALHQ LAQRKRDKLG
LALPIIATGH LTTVGASASE SVREIYVGSL EAFPTSAFPP ADYIALGHIH RPQKVGGLEH
IRYSGSPIAL SFDEARQQKE VLLLTFGDGS LQSITPLPVP VFQPMASLCG SLKELAGAIA
EQAAQGMPER PVWLEVQVSS DDYLSDLQSR INALCEGLPV EVLRIRRERG TASASLASEA
RETLDELSAE DVFSRRLQQE TLDEDDSQRL QELYRQVLET LPRA
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