| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3520 |
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| Symbol | tgt |
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| ID | 5105988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3879053 |
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| End bp | 3880186 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640504772 |
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| Product | queuine tRNA-ribosyltransferase |
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| Protein accession | YP_001189000 |
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| Protein GI | 146308535 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
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| TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.1241 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.323798 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCGCA CCTGTCGCAT GTCCTTCGAG TTGCTGGCTA CCGACGGCAA GGCCCGTCGC
GGCCGCCTGA CCTTCCCGCG TGGCGTGGTG GAAACGCCCG CTTTCATGCC GGTGGGCACC
TACGGCACGG TCAAGGGCAT GCTGCCGCGG GACGTCGAAG ACATCGGCGC GCAGATCATC
CTCGGCAACA CCTTCCACCT GTGGCTGCGC CCAGGCATGG AGGTGATCAA GAAACATGGC
GACCTGCATG ACTTCATGCA GTGGCAGGGG CCGATCCTCA CCGACTCCGG CGGTTTCCAG
GTGTTCAGTC TGGGCGCGAT GCGCAAGATT AAGGAAGAGG GCGTTTACTT CGCCTCGCCG
GTCGATGGCG CCAAAGTCTT CATGGGCCCG GAAGAGTCGA TGCAGGTGCA GCGCGACCTG
GGCTCGGACA TCGTGATGAT TTTCGACGAA TGCACGCCGT ACCCGGCGGA GTTCGATGTG
GCCAAGCGTT CCATGGAGCT GTCGCTGCGT TGGGCCAAGC GCTCCAAGAC CGCCCATGGC
GAGAGCACGG CGGCGTTGTT CGGCATCGTC CAGGGCGGCA TGCACGAAGA GCTGCGCATG
CGCTCGCTGG AGGGCTTGTG CGAAATCGGC TTCGACGGTC TGGCCATCGG TGGGCTGTCG
GTCGGCGAGC CGAAGGAAGA GATGATCCGC GTGCTCGACT TCCTGCCGCC GCACATGCCG
GCCGACAAGC CGCGCTATCT GATGGGCGTG GGCAAGCCGG AAGACCTGGT CGAGGGCGTG
CGCCGTGGCG TGGACATGTT CGATTGCGTG ATGCCGACGC GTAACGCGCG CAACGGCCAC
CTGTTCGTCG ATACCGGCGT GGTGAAGATC CGCAATGCCG TGCACAAGCA CGACGATTCG
CCGCTGGACC CGACCTGCGA CTGTTACACC TGCAAACACT TCTCGCGCGC TTATCTGCAT
CATCTGGACA AGTGCGGCGA AATGCTCGGT AGCATGCTCA ATACCATCCA TAACTTGCGG
CATTATCAGC GGGTTATGGC TGGTTTGCGC GAGGCTATCG GACAGGGTAC ATTGGCCGCC
TTTGTCGAAA CCTTCTATGC CAAGCGCGGC CTGCCCGTGC CGCCGCTGGA CTGA
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| Protein sequence | MSRTCRMSFE LLATDGKARR GRLTFPRGVV ETPAFMPVGT YGTVKGMLPR DVEDIGAQII
LGNTFHLWLR PGMEVIKKHG DLHDFMQWQG PILTDSGGFQ VFSLGAMRKI KEEGVYFASP
VDGAKVFMGP EESMQVQRDL GSDIVMIFDE CTPYPAEFDV AKRSMELSLR WAKRSKTAHG
ESTAALFGIV QGGMHEELRM RSLEGLCEIG FDGLAIGGLS VGEPKEEMIR VLDFLPPHMP
ADKPRYLMGV GKPEDLVEGV RRGVDMFDCV MPTRNARNGH LFVDTGVVKI RNAVHKHDDS
PLDPTCDCYT CKHFSRAYLH HLDKCGEMLG SMLNTIHNLR HYQRVMAGLR EAIGQGTLAA
FVETFYAKRG LPVPPLD
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