| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3517 |
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| Symbol | secF |
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| ID | 5105985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3875816 |
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| End bp | 3876733 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640504769 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001188997 |
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| Protein GI | 146308532 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.943932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.571932 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCAAAT CAACCATTCG TTTCATGGCG GTACGCAATA TCGCCTTCGC CATGACCCTG
GTGCTTACCG TGGTCGGCCT GGGCGCCCTG TTCTCCAAGG GGCTGAACTT CGGCCTGGAC
TTCACCGGCG GTACCCTGAT CGAGCTGCAA TACGAGCAGG CCGCGGATCT CGAGGTGATC
AAGCGCGAGC TGGGTCAGGC CGGTTATACC GATGCCGTGG TGCAGAGCTT CGGTGCCAGC
ACCGATGTGC TGGTGCGTCT GGCCGGGGAT GATCCGGATC TGGGCAGTCG GGTTGCCGAG
GCGCTGCGCA AGGTCGACAG CACCACCCGT TTCGAGGTCA AGCGGGTCGA GTTCGTCGGT
CCGCAGGTTG GCGAAGAGCT GCGCGACCAA GGCGGTATCG CCATGCTCCT GGCGCTGGGC
GGCATCATGC TGTACCTGGC ATTCCGCTTT CAGTGGAAGT TCGGTGTCGG TGCCATCGCA
TCCCTGGTGC ATGACGTGAT CATCACCCTG GGCGTGCTGG CGTTCTTCCG GGTTCCGTTC
GATCTGACCG TGCTGGCTGC CATCCTGGCG ATGATCGGCT ACTCGCTGAA CGACACCATC
ATCATCTACG ACCGCATCCG CGAGAACTTC CGCGTGCTGC GCAAGGCGTC GTTGATCGAG
AACATCGATA TCTCCATCAC TCAGACGCTG ATGCGCACCA TCGCCACCTC GTTGTCCACT
GCGCTGGCAC TGCTGGCGCT GCTGTTCTTC GGTGGTGACG TGCTGGCCGC CTTCGCCCTG
ACTCTGCTGG TCGGTGTGGT GGTGGGTACC TACTCGTCGG TTTATATCGG TGCCACGGTG
CTGGTGTGGC TGAAGCTCAG CGTGGAGGAC CTGATTCCGC CGGTAGCTGA GGCAGAAGTC
GACGACGGTC GTCCCTGA
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| Protein sequence | MIKSTIRFMA VRNIAFAMTL VLTVVGLGAL FSKGLNFGLD FTGGTLIELQ YEQAADLEVI
KRELGQAGYT DAVVQSFGAS TDVLVRLAGD DPDLGSRVAE ALRKVDSTTR FEVKRVEFVG
PQVGEELRDQ GGIAMLLALG GIMLYLAFRF QWKFGVGAIA SLVHDVIITL GVLAFFRVPF
DLTVLAAILA MIGYSLNDTI IIYDRIRENF RVLRKASLIE NIDISITQTL MRTIATSLST
ALALLALLFF GGDVLAAFAL TLLVGVVVGT YSSVYIGATV LVWLKLSVED LIPPVAEAEV
DDGRP
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