Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3512 |
Symbol | |
ID | 5105980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3871869 |
End bp | 3872366 |
Gene Length | 498 bp |
Protein Length | 165 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640504764 |
Product | BadM/Rrf2 family transcriptional regulator |
Protein accession | YP_001188992 |
Protein GI | 146308527 |
COG category | [K] Transcription |
COG ID | [COG1959] Predicted transcriptional regulator |
TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) [TIGR02010] iron-sulfur cluster assembly transcription factor IscR |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.112818 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACTGA CCACCAAAGG CCGTTACGCC GTTACCGCCA TGCTCGATCT GGCGCTGCAC GCGCAGCACG GTCCCGTTTC CCTGGCCGAT ATTTCCGAGC GGCAGGGCAT CTCCCTGTCC TATCTCGAGC AACTGTTCGC CAAGCTGCGC CGTGGCAACC TGGTTTCCAG CGTGCGCGGG CCCGGTGGCG GCTACCAGCT GTCGCGTGAC ATGCGCGGTA TCCAGGTGGC TCAGGTGATC GATGCGGTCA ACGAATCCGT GGATGCCACG CGTTGCCAGG GGCAGGGCGA TTGCCACTCC GGCGACACCT GTCTGACCCA TCACCTGTGG TGCGATCTCA GTCAGCAGAT TCATGAGTTC CTCAGTGGCA TCAGTCTGGC CGATCTGGTC GCGCGCCGTG AGGTTCAAGA GGTCGCGTTG CGCCAGGATC AGCGTCGCTG CTCCGGCAGA GGCACTATGC CGCATTTGGA TAAGATTGAA GCGTCTGCCA TCGAGTGA
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Protein sequence | MRLTTKGRYA VTAMLDLALH AQHGPVSLAD ISERQGISLS YLEQLFAKLR RGNLVSSVRG PGGGYQLSRD MRGIQVAQVI DAVNESVDAT RCQGQGDCHS GDTCLTHHLW CDLSQQIHEF LSGISLADLV ARREVQEVAL RQDQRRCSGR GTMPHLDKIE ASAIE
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