Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3500 |
Symbol | ispG |
ID | 5105968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3862215 |
End bp | 3863327 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640504752 |
Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
Protein accession | YP_001188980 |
Protein GI | 146308515 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATTGCG AATCGCCGAT CAAGCGTCGC CTGTCGCGCA AGATCTGGGT TGGCTCGGTA CCGGTAGGCG GCGATGCGCC GATTGCCGTA CAGAGCATGA CCAACACCGA CACCAACGAT GTGGCGGCCA CCGTGGCGCA GATCCGTCGC TTGGAAGATG CCGGCGCCGA CATCGTGCGC GTTTCCGTGC CGGACATGGA TGCCGCCGAG GCCTTCGGCC GCATCAAGCA GCAGGTACGC GTACCGCTGG TGGCGGATAT TCATTTCGAC TACCAGATCG CCCTGCGCGT GGCCGAGCTG GGCGTCGACT GCCTGCGCAT CAATCCCGGC AACATCGGCC GTGAGGACCG CGTCAAGGCG GTGGTCGAGG CCGCACGCGA CAAGGGCATT CCGATCCGCA TCGGGGTCAA CGCCGGGTCC CTGGAAAAGG ACCTGCAGAA GAAGTACGGC GAGCCGACCC CCGCGGCGCT GGTGGAATCC GCGCTGCGTC ATGTCGAGCA TCTCGATCGC CTGAACTTCC CGGACTTCAA GGTCAGCGTG AAGGCCTCCG ACGTGTTCAT GGCCGTCGAG GCCTATCGCC TGCTGGCCAA GCAGATCGAG CAACCGCTGC ACTTGGGCAT CACCGAGGCC GGTGGCCTGC GCTCCGGTAC CGTGAAGTCC GCAGTCGGCC TGGGCATGCT GCTGGCCGAG GGGATTGGCG ATACCATCCG CATCTCGCTG GCCGCCGACC CGGTGGAAGA GATCAAGGTC GGTTTCGACA TTCTCAAATC CCTGCGCCTG CGTTCGCGTG GCATCAACTT CATCGCCTGC CCGAGCTGCT CGCGGCAGAA CTTCGATGTG GTCAAGACCA TGAACGAACT GGAGAGCCGC GTCGAGGATC TGCTGGTGCC GCTGGACGTG GCCGTGATCG GCTGCGTGGT CAACGGTCCC GGCGAAGCCA AGGAAGCGCA CATCGGCCTC ACCGGTGGTA GCCCGAACAA CCTGGTCTAC ATCGACGGCA AACCGGCCTC GAAGCTGACC AACGAAAACC TGGTGGACGA GCTGGAGAAG CTCATCCGCG ACAAGGCGGC CGAGAAGGCC GCCGCCGATG CCGCCGTGAT CGTGCGCAGC TGA
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Protein sequence | MHCESPIKRR LSRKIWVGSV PVGGDAPIAV QSMTNTDTND VAATVAQIRR LEDAGADIVR VSVPDMDAAE AFGRIKQQVR VPLVADIHFD YQIALRVAEL GVDCLRINPG NIGREDRVKA VVEAARDKGI PIRIGVNAGS LEKDLQKKYG EPTPAALVES ALRHVEHLDR LNFPDFKVSV KASDVFMAVE AYRLLAKQIE QPLHLGITEA GGLRSGTVKS AVGLGMLLAE GIGDTIRISL AADPVEEIKV GFDILKSLRL RSRGINFIAC PSCSRQNFDV VKTMNELESR VEDLLVPLDV AVIGCVVNGP GEAKEAHIGL TGGSPNNLVY IDGKPASKLT NENLVDELEK LIRDKAAEKA AADAAVIVRS
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