| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3402 |
|---|
| Symbol | |
|---|
| ID | 5105874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3756942 |
|---|
| End bp | 3758318 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640504658 |
|---|
| Product | signal recognition particle subunit FFH/SRP54 (srp54) |
|---|
| Protein accession | YP_001188886 |
|---|
| Protein GI | 146308421 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0541] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.625555 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAAA ATCTTACCGA TCGCCTGTCC CAGACGCTGC GTAACGTCAC GGGCAAGGCC
AAGCTGACCG AAGACAACAT CAAGGATACG CTGCGCGAAG TGCGCATGGC CCTGCTCGAG
GCCGACGTGG CTCTGCCGGT GGTCAAGGAC TTCGTCGGCA AGGTCAAGGA GCGTGCCGTT
GGCACCGAGG TGTCCAAGAG CCTGACCCCG GGCCAGGCCT TCGTGAAGAT CGTCCGCGCC
GAGCTCGAAG AGCTGATGGG CGCCGCCAAC GAAGACCTGT CGCTCAATGC GGCGCCGCCC
GCCGTGGTGC TGATGGCCGG CCTGCAGGGT GCGGGCAAGA CCACCACCGC CGGCAAGCTG
GCCAAGTTCC TCAAGGAGCG CAAGAAGAAG TCGGTGCTGC TGGTGTCCGC CGACGTCTAC
CGCCCGGCGG CGATCAAGCA GCTGGAAACC CTGGCCGGCG ACCTGGGCGT CACCTTCTTT
CCCTCCGATG CCAGCCAGAA GCCGGTGGAC ATCGCCAACG CAGCGATCCG CGAAGCCAAG
CTGAAGTTCA TCGACGTGGT CATCCTCGAT ACCGCCGGTC GCCTGGCCGT GGATGCCGAG
ATGATGGCCG AGATCCAGGC CCTGCATGCG GCGGTCAAGC CGGTCGAGAC GCTGTTCGTG
GTCGACGCCA TGACCGGTCA GGACGCCGCC AACACCGCCA AGGCGTTCAG CGACGCGCTG
CCGCTGACCG GTGTGGTGCT GACCAAGGTC GACGGCGATG CCCGTGGCGG TGCTGCGCTG
TCGGTGCGCC ATATCACCGG CAAGCCGATC AAGTTCATCG GTATGGGTGA GAAGAGCGAC
GCGCTCGAGC CCTTCCACCC GGACCGTATC GCCTCGCGCA TTCTCGGCAT GGGCGATGTG
CTCAGCCTGA TCGAGCAGGC CGAGCAGACC CTTGATCGCG AGAAGGCTGA GAAGCTCACC
AAGAAGCTGA AGAAGGGCAA GGGCTTCGAC CTCGAAGACT TCCGTGATCA GCTGCAGCAG
ATGAAGAACA TGGGCGGTCT CGGCGGCCTG ATGGACAAGC TGCCGTCCAT CGGTGGCGTC
AACCTGTCGC AGATGGGCAA CGCCCAGGGC GCGGCCGAGA AGCAGTTCAA GCAGATGGAG
GCGATCATCA ACTCGATGAC GCCGGCCGAG CGCCGCGACC CGGACATCAT CAGCGGCTCG
CGCAAGCGGC GCATCGCGCT GGGCTCCGGC ACCCAGGTGC AGGACATCGG CAGGCTGATC
AAGCAGCACA AGCAGATGCA GAAGATGATG AAGAAATTCA CCGCCAAGGG CGGCATGGCC
AAGATGATGC GCGGCATGGG TGGCATGTTC CCCGGCGGCG GAATGCCGAA ATTCTGA
|
|---|
| Protein sequence | MFENLTDRLS QTLRNVTGKA KLTEDNIKDT LREVRMALLE ADVALPVVKD FVGKVKERAV
GTEVSKSLTP GQAFVKIVRA ELEELMGAAN EDLSLNAAPP AVVLMAGLQG AGKTTTAGKL
AKFLKERKKK SVLLVSADVY RPAAIKQLET LAGDLGVTFF PSDASQKPVD IANAAIREAK
LKFIDVVILD TAGRLAVDAE MMAEIQALHA AVKPVETLFV VDAMTGQDAA NTAKAFSDAL
PLTGVVLTKV DGDARGGAAL SVRHITGKPI KFIGMGEKSD ALEPFHPDRI ASRILGMGDV
LSLIEQAEQT LDREKAEKLT KKLKKGKGFD LEDFRDQLQQ MKNMGGLGGL MDKLPSIGGV
NLSQMGNAQG AAEKQFKQME AIINSMTPAE RRDPDIISGS RKRRIALGSG TQVQDIGRLI
KQHKQMQKMM KKFTAKGGMA KMMRGMGGMF PGGGMPKF
|
|---|
| |