Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3400 |
Symbol | rimM |
ID | 5105872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3756002 |
End bp | 3756538 |
Gene Length | 537 bp |
Protein Length | 178 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640504656 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_001188884 |
Protein GI | 146308419 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 0.80773 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTACGA CGCCGGCCGT CGCCGAGGAT TTGATCGTTC TCGGCAAGAT TGTTTCGGTG CACGGCGTCA GGGGTGAAGT GAAGGTGTAT TCCTTTACCG ACCCCATCGA TAACGTGCTC GACTACCGCC ACTGGACGCT CAGGCGTGAC GGTGAGGTAA AGAAAGTGGA ACTGGCCAGC GGCCGCCTGC AAGGCAAGGT GCTGGTAGCC AAGTTGAAAG GTCTGGATGA TCGCGAAATT GCGCGTACCT ACGCCGGTTT CGAGATCTGC GTGCCGCGCA GCGAGCTGCC GGACCTGGAA GAGGGCGAGT TCTACTGGTA CCAGTTGCAG GGCTTGAAGG TCATCGATCA GGCGGGGCAG TTGCTCGGTG TGGTCGACCA TCTGTTCGAG ACCGGTGCCA ACGATGTGAT GGTGGTCAAG GCTTGCGCAG GCAGCCTGGA TGATCGCGAG CGTTTGCTGC CCTACACGGA TCAGTGCGTG CTTTCGATCG ATCTGGCAGC TGGCGAGATG CGGGTCGACT GGGATGCGGA TTTCTAA
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Protein sequence | MSTTPAVAED LIVLGKIVSV HGVRGEVKVY SFTDPIDNVL DYRHWTLRRD GEVKKVELAS GRLQGKVLVA KLKGLDDREI ARTYAGFEIC VPRSELPDLE EGEFYWYQLQ GLKVIDQAGQ LLGVVDHLFE TGANDVMVVK ACAGSLDDRE RLLPYTDQCV LSIDLAAGEM RVDWDADF
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