| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3399 |
|---|
| Symbol | trmD |
|---|
| ID | 5105871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3755253 |
|---|
| End bp | 3755996 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640504655 |
|---|
| Product | tRNA (guanine-N(1)-)-methyltransferase |
|---|
| Protein accession | YP_001188883 |
|---|
| Protein GI | 146308418 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.834555 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.856746 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTAG AAGTCATCAC CCTGTTCCCG GAAATGTTTG CCGCCATCGG CGAGTACGGC
ATCACCAGTC GTGCGGTCAA GCAGGAGCTG CTCAAGCTCA ATTGCTGGAA CCCGCGGGAC
TACACGACGG ATCGTCACCA CACGGTGGAT GACCGCCCCT TCGGCGGTGG TCCGGGAATG
GTGATGAAGA TCAAGCCTCT CGAGGATGCC CTGGCCAGCG CCAGGCAGGC CGCGGGAGAG
ACGGCGAAGG TGATCTACCT GTCGCCGCAG GGGCGCCGCC TGAATCAGGC TGCGGTCCGC
GAGCTGGCGC AGGAAGATGC ACTGATCCTG ATCGCCGGTC GTTATGAAGG CATCGACGAG
CGCTTCATCG AGACGCATGT CGATGAGGAA TGGTCGATTG GCGACTACGT CCTGTCCGGC
GGTGAGCTGC CGGCCATGGT GCTGATCGAT GCGGTAACGC GCCTTTTGCC TGGTGCATTG
GGTCATGCCG ATTCGGCCGA GGAGGACTCC TTTACGGATG GCCTGCTCGA CTGCCCGCAC
TACACCCGCC CGGAGGTGTA TGCGGATAAA CGTGTTCCCG AAGTGTTGCT TAGTGGCAAC
CACGAACACA TCCGGCGCTG GCGTTTGCAG CAGTCCCTTG GTCGGACCTG GGAACGTCGC
GCTGATCTTC TGGATAGCCG CTCGCTTTCT GGAGAAGAGA AGAAGCTGCT GGAGGAATAC
ATCCGCCAGC GGGACGATAG TTAA
|
|---|
| Protein sequence | MRVEVITLFP EMFAAIGEYG ITSRAVKQEL LKLNCWNPRD YTTDRHHTVD DRPFGGGPGM
VMKIKPLEDA LASARQAAGE TAKVIYLSPQ GRRLNQAAVR ELAQEDALIL IAGRYEGIDE
RFIETHVDEE WSIGDYVLSG GELPAMVLID AVTRLLPGAL GHADSAEEDS FTDGLLDCPH
YTRPEVYADK RVPEVLLSGN HEHIRRWRLQ QSLGRTWERR ADLLDSRSLS GEEKKLLEEY
IRQRDDS
|
|---|
| |