| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3315 |
|---|
| Symbol | |
|---|
| ID | 5105788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3658025 |
|---|
| End bp | 3658783 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640504572 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001188800 |
|---|
| Protein GI | 146308335 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5473] Predicted integral membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.607217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGACG CAATCACCCC CAATCCCTAC GCAGCCCCCG CCAGCAACCT GCAGCAGACC
ACTGGCGACC AGGTCCCGAG CATCGAAGAA GCGCTGGCAC GCGGTTACGA CTTCAGCATC
GGCGAGCTGA TCAGCGAGTC CTGGAACAGG GTAAAAGGCA CCAAGGGCAT CATCATCGGC
GGCTTTCTGG TGTTCTACGT CGTGCTGATG CTGGCCACCC TGATTCTTGG CGGCGTCATC
GGCATCTTCG GTGCCCTCAG CGAAAACCTG TTCCTGACGT TCGTCGGCGA GATTGTGATT
TCGCTGCTGG CTTCGGCGCT GGCCTATCCC TTCATGGCCG GTATCAACAT GGTGGGCATC
CGCCGCGCCG CCGACCAACC GATCAGCTTC AACGAGATCT TCAGCCACTT CGGCCGCACC
GTGCCGCTGG TCATCACCGC GGTGGTGATG ATGCTGCTGA TCTACCTGGG CATGTTCCTG
CTGCTGATTC CCGGCATCTA CCTGGGCGTG GCCTACCTGC TGGCGATCCC CCTGGTGGTA
GAGCGCGGCC TGAGCCCCTG GCAGGCGCTG GAAGCCTCGC GCAAGGCCAT CACCCAGCAC
TGGTTCAAGG TCTTCGGCCT GTTCCTGCTG CTCGGCCTGA TTGTCATGGT CAGCGCCATT
CCCCTGGGTA TCGGCCTGGT CTGGACCATT CCGCTGATGG TCATCGCCAT GGGTGTGCTC
TATCGCACCA TCTTCGGCGT ACTGCCTGCC GCTCAATAA
|
|---|
| Protein sequence | MSDAITPNPY AAPASNLQQT TGDQVPSIEE ALARGYDFSI GELISESWNR VKGTKGIIIG
GFLVFYVVLM LATLILGGVI GIFGALSENL FLTFVGEIVI SLLASALAYP FMAGINMVGI
RRAADQPISF NEIFSHFGRT VPLVITAVVM MLLIYLGMFL LLIPGIYLGV AYLLAIPLVV
ERGLSPWQAL EASRKAITQH WFKVFGLFLL LGLIVMVSAI PLGIGLVWTI PLMVIAMGVL
YRTIFGVLPA AQ
|
|---|
| |