| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3230 |
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| Symbol | mnmC |
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| ID | 5106737 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3573898 |
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| End bp | 3575871 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640504487 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_001188715 |
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| Protein GI | 146308250 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATG CCCACAACGC CCAGCTCGAC TGGGACGAAC ACGGCCAGCC GCTGTCGCGC
AGCTATGGCG ACGTGTACTT CTCCCGCGCC AACGGCCTGG AAGAAACCCG TCACGTCTTC
CTCGCTCACA ACCAGATCAT CGAACGCTGC CAGGCCCTGC CGGCCGGCGG GCGCCTGGTG
ATCGGCGAAA CCGGCTTCGG CACCGGGCTC AATTTTCTCT GCGCCTGGCA GGCCTTCGCC
GAACACGCCC CGCGCGATGC GCGGCTGCAC TTCGTCAGCG TGGAGAAATT CCCCCTGACC
CAGACCGACC TGCAACGCGC CCTGGCCCTG TGGCCCGAGC TGGCGCCCTA CGCCGAGCAG
CTGCTGGCGC AGTACCGCGC CATCCATCCC GGCTTTCAGC GCCTGCTGCT CGACGGCGGC
CGCGTGGTGC TGACGCTGAT GATCGGTGAC GTGCTCGAGT GCCTGCCGCA GCTGGACGCC
AGGATCGATG CCTGGTTCCT CGACGGTTTC GCCCCGGCGA AGAACCCGGA GATGTGGACG
GACAGTCTGT TCACCGAACT GGCCAGGCTG TCGGCGCCCG GCGCCACGCT GGCCACCTTC
ACCAGTGCCG GCTTCGTCCG CCGCGGGCTG ATCGCCGCCG GCTTCGCCGT GCAGCGGGTC
AAGGGCTTCG GCCACAAGCG CGAGATGCTG GCCGGCCCCT TCCAGGCTGA ACCGGCACCG
CGCTCTGCTC CCTGGTTCGC CCGCCCGACG CTGGCGGCCG GCGCACGCCA GGCCGTGGTG
ATCGGCGCCG GCCTGGCCGG TTGCGCCACC GCCGCCAGCC TGGCCGCACG CGGCTGGCGC
GTGACCCTGC TGGAGCGCCA TGACGATGTT GCCCGCGAAG CGTCGGGCAA CCCCCAGGGC
GTGCTCTACC TGAAGCTGTC GGCCCATGGC ACGGTGCTGT CGCGGCTGAT CGTCGCCGGT
TTCGGCCATA CCCGCCGCCT GCTCGAGCGC CTGCAGCGCG GCAGCGACTG GGATGCCTGC
GGCGTGCTGC AACTGGCCTT CGATGCCAAG GAAGCCGAGC GCCAGAACAA GCTGGCCGCG
GCCTTCCCGG ACGACCTGCT GCACGCGTTG CCCCAGACCG AAGCCGAAGC TCGTGCCGGC
ATCGGCCTGC CAGCCGGCGG CCTGTTCTAC CCGGATGCCG GCTGGGTGCA CCCGCCAGCC
CTGTGCCGGC AACTGGCGCA GCATCCGCTG ATCGAATTGC GCCCCTATCA GGAGGCGCTG
AGCCTCAGTC GTCAGCAAGA GCGCTGGTGC GTCGAAGGAC AGAACGGCGT GCTGGCCGAA
GCGCCGGTGC TGATCCTGGC CTGCGCCGCG GAGATCGGCC GCCTGCTGCC GGAGGCGAAT
CTGCCACTCA AGCGCATTCG CGGGCAGATC AGCCGCCTGC CGGCCAATGA ATCCAGCAGT
GCGCTGCGCA CCGTGGTTTG CGCCGAAGGC TACGTCGCCC CTGCGCGCGA CGACGAACAC
ACCCTGGGCG CCAGCTTCGA TTTCCACAGC GACGATCTGA CGCCCAGCGT CGCCGAGCAC
GCCGGCAACC TTGAGCTGCT ACGGGAGATT TCTCAGGACC TGGCCGAGCG CCTGGATACA
CAGACGCTCG ATCCGGCGAC GCTGCAAGGC CGCGCCGCGT TTCGCTGCAC CAGCCCGGAC
TACCTGCCGC TGGTAGGCCC GCTGGCCGCT GGCCAAGCCT TCAACCAGGC CTACGCCGTG
CTGGCCAAGG ACGCCCGCCA GGTGCCGGAA ACGCCCTGCC CCTGGCTGGA TGGCCTGTAT
ATCAACAGCG GCCATGGCTC ACGCGGGCTG ATCACCGCGC CGCTGTCGGG CGAGCTGATC
GCCGCCTGGC TGGAGGACGA ACCACTGCCG CTGCCACGTG AGGTGGCCGA AGCCTGCCAC
CCCAATCGCT TCATGCTGCG CCAGCTGATT CGCGGTACCG GCTCGCCCAC CTGA
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| Protein sequence | MSDAHNAQLD WDEHGQPLSR SYGDVYFSRA NGLEETRHVF LAHNQIIERC QALPAGGRLV
IGETGFGTGL NFLCAWQAFA EHAPRDARLH FVSVEKFPLT QTDLQRALAL WPELAPYAEQ
LLAQYRAIHP GFQRLLLDGG RVVLTLMIGD VLECLPQLDA RIDAWFLDGF APAKNPEMWT
DSLFTELARL SAPGATLATF TSAGFVRRGL IAAGFAVQRV KGFGHKREML AGPFQAEPAP
RSAPWFARPT LAAGARQAVV IGAGLAGCAT AASLAARGWR VTLLERHDDV AREASGNPQG
VLYLKLSAHG TVLSRLIVAG FGHTRRLLER LQRGSDWDAC GVLQLAFDAK EAERQNKLAA
AFPDDLLHAL PQTEAEARAG IGLPAGGLFY PDAGWVHPPA LCRQLAQHPL IELRPYQEAL
SLSRQQERWC VEGQNGVLAE APVLILACAA EIGRLLPEAN LPLKRIRGQI SRLPANESSS
ALRTVVCAEG YVAPARDDEH TLGASFDFHS DDLTPSVAEH AGNLELLREI SQDLAERLDT
QTLDPATLQG RAAFRCTSPD YLPLVGPLAA GQAFNQAYAV LAKDARQVPE TPCPWLDGLY
INSGHGSRGL ITAPLSGELI AAWLEDEPLP LPREVAEACH PNRFMLRQLI RGTGSPT
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