| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3215 |
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| Symbol | |
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| ID | 5106544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3554859 |
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| End bp | 3555614 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640504472 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001188700 |
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| Protein GI | 146308235 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.707751 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGA TCGCCATCGT AACCGGGTCC AGCCGTGGCC TCGGGCGTAA TACCGCGCTG
AACATCGCTC GCCAGGGCAG CGACGTCATC GTCACCTACC ACAGCCAGGC CGATGCCGCC
CTGGCTCTGG TCGCCGAGAT CGAGGCGCTG GGGCGCAAGG CCGTGGCGCT GCAGCTCGAC
GTGGGCGACG TGTCCACCTT CGCCGCCTTC GCCGAGACGC TGCGAGGCGT GCTCGCACAG
ACCTGGCAGC GCGACCGCTT CGATCACCTC GTCAACAACG CCGGGCATGG CGATATGGCG
ACCATTGCCG AAACCACCGA AGCCCAGTTC GACGCTCTGG TGAACGTGCA CTTCAAGGGT
GTGTTCTTCC TCACCCAGGC GCTGCTGCCG CTGATTGCCG ACGGCGGCCG GATCGTCAAC
CTTTCCACGG GGCTGACCCG CTTCGCCTCG CCTGGTTTCT CCGCCTACGC CGCGGCCAAG
GGCGCGGTCG AGGTGCTGAG CGTGTACATG GCCAAGGAAC TGGGCAGCCG CGGCATCGCC
GTGAACACGG TGGCGCCGGG GGCGATCGAG ACCGATTTTC TGGGCGGGGC GGTGCGCGAC
ACGCCGGATC TGAATCAGGT TTTCGCGCAG ATGACGGCGC TTGGCCGCGT GGGCGTGCCC
GACGATATCG GCCCGATGAT CGCCGGCCTG CTCGGCGAGC AGAATCGCTG GGTCAACGCC
CAGCGTATCG AGGTCTCGGG GGGCCAGGCG ATCTGA
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| Protein sequence | MTKIAIVTGS SRGLGRNTAL NIARQGSDVI VTYHSQADAA LALVAEIEAL GRKAVALQLD
VGDVSTFAAF AETLRGVLAQ TWQRDRFDHL VNNAGHGDMA TIAETTEAQF DALVNVHFKG
VFFLTQALLP LIADGGRIVN LSTGLTRFAS PGFSAYAAAK GAVEVLSVYM AKELGSRGIA
VNTVAPGAIE TDFLGGAVRD TPDLNQVFAQ MTALGRVGVP DDIGPMIAGL LGEQNRWVNA
QRIEVSGGQA I
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