Gene Pmen_3178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3178 
Symbol 
ID5106507 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3516149 
End bp3516850 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content65% 
IMG OID640504434 
Producthypothetical protein 
Protein accessionYP_001188663 
Protein GI146308198 
COG category[S] Function unknown 
COG ID[COG0217] Uncharacterized conserved protein 
TIGRFAM ID[TIGR01033] DNA-binding regulatory protein, YebC/PmpR family 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.235776 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCGCCC AGTGGAAAGC CAAACCCAAA GAAGCCGCCG CCAATGCCCG AGGCAAGATC 
TTCGGCAAGC TGGTGAAGGA AATCATGATC GCCGCGCGCA ACGGCGCCGA CCCGGACATG
AACCCCAAGC TGCGCCTGGC CGTGCACCAG GCCAAGAAGG CTTCGATGCC CAAGGACACT
CTGGAGCGCG CCATCAAGAA AGGCGCCGGC CTGTCCGGTG AGGTGATCAA CTACGAGCGC
ACTCTCTACG AAGGCTTCGC CCCGCATCAG GTGCCGCTGA TCGTCGAGTG CCTGACCGAC
AACGTCAACC GCACCGTGGC CGAGATCCGC GTGCTGTTCC GCAAGGGCCA ACTCGGTGCG
TCCGGCTCGG TCAGCTGGGA CTTCGACCAC GTTGGCCTGA TCGAAGCCAC CACCGAGGAT
GGCGCCGACC CGGAACTGGC CGCCATCGAG GCCGGCGCCC AGGACTTCGT CCCCGATGAC
GAGGGTGCGA CCCTGTTCAT CACCGACCCG ACCGACCTCG ACGCCGTGTG CAAGGCACTG
CCGGAGCAGG GCTTCACCGT CAACTCGGCC AAGCTCGGCT ACCGCCCGAA GAACCCGGTG
ACCAGCCTGA CGCCGGAGCA GATGGAAGAA GTCGAAGCCT TCCTCGAAGC CATCGACGGT
CACGACGACG TGCAGAACGT CTACGTCGGC CTGGCCGGCT GA
 
Protein sequence
MGAQWKAKPK EAAANARGKI FGKLVKEIMI AARNGADPDM NPKLRLAVHQ AKKASMPKDT 
LERAIKKGAG LSGEVINYER TLYEGFAPHQ VPLIVECLTD NVNRTVAEIR VLFRKGQLGA
SGSVSWDFDH VGLIEATTED GADPELAAIE AGAQDFVPDD EGATLFITDP TDLDAVCKAL
PEQGFTVNSA KLGYRPKNPV TSLTPEQMEE VEAFLEAIDG HDDVQNVYVG LAG