Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3178 |
Symbol | |
ID | 5106507 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 3516149 |
End bp | 3516850 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640504434 |
Product | hypothetical protein |
Protein accession | YP_001188663 |
Protein GI | 146308198 |
COG category | [S] Function unknown |
COG ID | [COG0217] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.235776 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGCCC AGTGGAAAGC CAAACCCAAA GAAGCCGCCG CCAATGCCCG AGGCAAGATC TTCGGCAAGC TGGTGAAGGA AATCATGATC GCCGCGCGCA ACGGCGCCGA CCCGGACATG AACCCCAAGC TGCGCCTGGC CGTGCACCAG GCCAAGAAGG CTTCGATGCC CAAGGACACT CTGGAGCGCG CCATCAAGAA AGGCGCCGGC CTGTCCGGTG AGGTGATCAA CTACGAGCGC ACTCTCTACG AAGGCTTCGC CCCGCATCAG GTGCCGCTGA TCGTCGAGTG CCTGACCGAC AACGTCAACC GCACCGTGGC CGAGATCCGC GTGCTGTTCC GCAAGGGCCA ACTCGGTGCG TCCGGCTCGG TCAGCTGGGA CTTCGACCAC GTTGGCCTGA TCGAAGCCAC CACCGAGGAT GGCGCCGACC CGGAACTGGC CGCCATCGAG GCCGGCGCCC AGGACTTCGT CCCCGATGAC GAGGGTGCGA CCCTGTTCAT CACCGACCCG ACCGACCTCG ACGCCGTGTG CAAGGCACTG CCGGAGCAGG GCTTCACCGT CAACTCGGCC AAGCTCGGCT ACCGCCCGAA GAACCCGGTG ACCAGCCTGA CGCCGGAGCA GATGGAAGAA GTCGAAGCCT TCCTCGAAGC CATCGACGGT CACGACGACG TGCAGAACGT CTACGTCGGC CTGGCCGGCT GA
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Protein sequence | MGAQWKAKPK EAAANARGKI FGKLVKEIMI AARNGADPDM NPKLRLAVHQ AKKASMPKDT LERAIKKGAG LSGEVINYER TLYEGFAPHQ VPLIVECLTD NVNRTVAEIR VLFRKGQLGA SGSVSWDFDH VGLIEATTED GADPELAAIE AGAQDFVPDD EGATLFITDP TDLDAVCKAL PEQGFTVNSA KLGYRPKNPV TSLTPEQMEE VEAFLEAIDG HDDVQNVYVG LAG
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