| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3147 |
|---|
| Symbol | |
|---|
| ID | 5106476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3482598 |
|---|
| End bp | 3484472 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640504403 |
|---|
| Product | phospholipid/glycerol acyltransferase |
|---|
| Protein accession | YP_001188632 |
|---|
| Protein GI | 146308167 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0204] 1-acyl-sn-glycerol-3-phosphate acyltransferase |
|---|
| TIGRFAM ID | [TIGR00530] 1-acyl-sn-glycerol-3-phosphate acyltransferases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.733327 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.020121 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAC AATCGCAATT CGCCCTGCTC GGCAAGAAGC GCTTTCTGCC GTTTTTCGTG
ACGCAATTGC TCGGCGCCTT CAATGACAAC ATCTTCAAGC AGTCGCTGAT TCTCGCCATC
CTGTTCAAGC TCAACACCGG CGTCGACCGC GATCTGCTGG TCAACCTCTG CGCCTTGCTG
TTCATCCTGC CGTTCTTTCT GTTCTCCGCC CTCGGCGGCC AGTTCGGCGA GAAGTTCGCC
AAGGACGCGC TGATCCGCCG GATCAAGCTG GCCGAGGTGT TCATCATGCT CACCGGCGCC
GCCGGGGTGC TGCTCGACAG CCTGCCGCTG ATGCTGGTGG TGCTGTTCGC CATGGGCACC
CAGTCGGCGC TGTTCGGTCC GGTGAAGTAT TCGATCCTGC CGCAGCACCT CAAGGAAGAA
GAGCTGGTGG GCGGCAACGC CCTGGTGGAG ATGGGCACCT TCCTGGCGAT TCTGGCCGGC
ACCATCGGCG CCGGCATCAT GATGGCCAGC AGCAGTTACG CGTCCATCGT CGCCGGCTCG
GTGGTCGGTG TGGCGCTGCT CGGCTACCTG GCCAGCCACG GCATTCCGCG CGCGGCGGCG
GCGATGCCGA CGCTGCCGCT GGACTGGAAC ATTTTCCGCC AGTCCTGGGT GATCATGAAG
CTCGGCCTGG GCCAGCGTCC GGCGGTGTCG CGCTCGCTGG TGGGCAACTC CTGGTTCTGG
TTCCTCGGCG CGATCTACCT GACGCAGATT CCGGCCTACG CCAAGGAGTG GCTGTACGGT
GACGAGAGCG TGGTAACGCT GATTCTCACC GTGTTCTCGC TGGGCATCGG CCTGGGCTCG
ATGCTTTGCG AGCGCATGAG CGGGCACAAG GTGGAGATCG GCCTGGTGCC GTTCGGCTCC
ATCGGCCTGA CCCTGTTCGG CATGCTGCTG TGGTGGTTCT CCGGCGGCTT CCCGCAGGGT
GCCACGCCGC ATGACTGGCT GGCGCTGCTG GGCCATGGTC AGGCCTGGTG GATTCTCGGC
TGCATTCTCG GCATCGGTCT GTTCGGCGGC TTCTACATCG TGCCGCTGTA TGCGCTGATC
CAGTCGCGCA CCGCCGAGCA CGAGCGGGCG CGGGTGATCG CCGCCAACAA CATCCTCAAC
GCGCTGTTCA TGGTCGCCTC GGCCATCGTC GCGATCCTCT TTCTCAGCGT CGCCGGGCTG
TCGATTCCGC AGCTGTTCCT GGCCATCTCG CTGATGAACG TGGCGGTCAA CAGCTACATC
TTCAAGATCG TCCCCGAATT CAGCATGCGC TTTCTCATCT GGCTGCTGGG GCATTCGATG
TACCGGGTGC AGCACAAGGG GCTCGATGCC ATTCCCGACG AGGGCGCGGC GGTGCTGGTG
TGCAACCACG TGTCCTTCGT CGATGCGCTG CTGATCGGCG GTGCGGTGCG GCGGCCGGTG
CGCTTCGTCA TGTACTACAA GATCTACGAT CTGCCGGTAC TCAACTTCGT CTTCCGCACT
GCCGGCACCG TGCCGATCGC CGGGCGCAAC GAGGACCTGC TGATCTACGA CGCGGCGTTC
AAGAAGATCG CCGAGTACCT GCGCAACGGC GAGCTGGTGT GCATCTTCCC CGAGGGCAAG
CTGACCGGCG ATGGCGAGAT CAACGAGTTC AAGGCCGGGG TCGAGCGCAT TCTCGAAGAG
AACCCGGTGC CGGTGATTCC CATGGCGCTG CAGGGCCTGT GGGGCAGCTT CTTCAGCCGT
GATCCGCACA AGGGGCTGTT CAAGCGTTTC TGGTCGCGGG TCGGGCTGGT GGCCGGGGCG
CCGCTGGCGC CGGAGCAGGC CAAGCGTGAA ATGCTGCAGG CGCAGGTGAC GGAGTTGCGC
GGGAATTGGC GTTGA
|
|---|
| Protein sequence | MTQQSQFALL GKKRFLPFFV TQLLGAFNDN IFKQSLILAI LFKLNTGVDR DLLVNLCALL
FILPFFLFSA LGGQFGEKFA KDALIRRIKL AEVFIMLTGA AGVLLDSLPL MLVVLFAMGT
QSALFGPVKY SILPQHLKEE ELVGGNALVE MGTFLAILAG TIGAGIMMAS SSYASIVAGS
VVGVALLGYL ASHGIPRAAA AMPTLPLDWN IFRQSWVIMK LGLGQRPAVS RSLVGNSWFW
FLGAIYLTQI PAYAKEWLYG DESVVTLILT VFSLGIGLGS MLCERMSGHK VEIGLVPFGS
IGLTLFGMLL WWFSGGFPQG ATPHDWLALL GHGQAWWILG CILGIGLFGG FYIVPLYALI
QSRTAEHERA RVIAANNILN ALFMVASAIV AILFLSVAGL SIPQLFLAIS LMNVAVNSYI
FKIVPEFSMR FLIWLLGHSM YRVQHKGLDA IPDEGAAVLV CNHVSFVDAL LIGGAVRRPV
RFVMYYKIYD LPVLNFVFRT AGTVPIAGRN EDLLIYDAAF KKIAEYLRNG ELVCIFPEGK
LTGDGEINEF KAGVERILEE NPVPVIPMAL QGLWGSFFSR DPHKGLFKRF WSRVGLVAGA
PLAPEQAKRE MLQAQVTELR GNWR
|
|---|
| |