| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3111 |
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| Symbol | |
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| ID | 5107433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3437801 |
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| End bp | 3439354 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640504367 |
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| Product | transcriptional regulator, TyrR |
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| Protein accession | YP_001188596 |
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| Protein GI | 146308131 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.605009 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTATCA AGGTCCATTG CCAGAACCGT GTCGGCATCC TGCGTGACAT CCTCAACCTG
CTGGTCGACT ACGGCATCAA CGTCGCCCGT GGCGAAGTCG GTGGCGAGCA GGGCAACGCC
ATCTACCTGC ACTGCCCGAA TCTGATCAAT CTGCAATTCC AGTCGCTGCG GCCGAAGTTC
GAGGCCATTG CCGGTGTGTT CGGCGTCAAA CGCGTCGGCC TGATGCCCAG CGAGCGGCGT
CATCTGGAGC TCAATGCGCT GCTCGGTGCG CTGGATTTTC CGGTGCTGTC CATCGACATG
GCCGGCAGTA TCGTCGCGGC CAACCGCAGC GCCGCGCAGT TGCTCGGCGT GCGCGTGGAC
GAGGTGCCGG GCATGGCCCT GTCGCGTTAT GCCGAGGATT TCGATCTGCC CGAACTGGTG
CGCGCCAACA AGACGCGGAT CAACGGCCTG CGGGTGAAGA TCAAGGGCGA CGTGTTTCTT
GCCGATATCG CGCCGCTGCA GAACGAACAC GACGACAGCG AGGCATTGGC CGGTGCGGTG
CTGACCCTGC ACCGCGCCGA TCGGGTGGGT GAACGCATCT ACCACGTGCG CAAGCAGGAG
CTGCGCGGCT TCGACTCGAT CTTCCAGAGC TCCAAGGTCA TGGCCGCGGT GGTCAAGGAG
GCGCGGCGCA TGGCACCGCT GGATGCGCCG CTGCTGATCG AGGGCGAAAC CGGTACCGGC
AAGGAATTGC TGGCGCGTGC CTGCCACCTG GCCAGCCCGC GTGGTCAGTC GCCGTTCATG
GCGCTCAATT GCGCGGGGTT GCCCGAGTCC ATGGCCGAGA CCGAGCTGTT CGGTTACGGC
CCCGGCGCCT TCGAAGGGGC GCGCCCGGAA GGCAAGCTCG GCCTGCTCGA GCTGACCGCC
GGCGGCACGC TGTTTCTCGA TGGCGTCGGC GAGATGAGCC CGCGCCTGCA GGCCAAGCTG
CTGCGCTTTC TGCAGGACGG CTGCTTCCGC CGTGTCGGCA GCGACGAGGA GGTGTACCTG
GACGTGCGAG TGATCTGCGC CACCCAGGTC GATCTGTCCG AGCTGTGCGC CCGCGGCGAG
TTCCGTCAGG ATCTCTACCA CCGTCTCAAC GTGCTGTCCC TGCATATCCC GCCGCTGCGC
GAATGCCTCG ACGGCCTGGA GCCGTTGGTG GAGCACTTTC TCGACTCGGC CAGCCGGCAG
ATCGGTTGCC CATTGCCGAA GCTGGCGCCG CAGGCCTTCG AGCGCATGGC CCATTACCAC
TGGCCGGGCA ACGTGCGCCA GTTGGAAAAC GTGCTGTTCC AGGCGGTATC GCTGTGCGAT
GGCGGCACGG TGAAGGCCGA GCATATCCGC CTGCCGGACT ACGGCGCGCC GCAGCCGCTC
GGCGAGTTCT CGGTGGAAGG CAGCCTCGAC GACATCCTCG GCCGCTTCGA GAAAGCCGTG
CTGGAGCGGC TGTTTCGCGA TCATCCCAGC AGCCGTCAGC TGGGCAAGCG CCTCGGCGTG
TCACACACCA CCATCGCCAA CAAGCTGCGT CAGCATGGGT TGGGCAGGGA GTAG
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| Protein sequence | MRIKVHCQNR VGILRDILNL LVDYGINVAR GEVGGEQGNA IYLHCPNLIN LQFQSLRPKF
EAIAGVFGVK RVGLMPSERR HLELNALLGA LDFPVLSIDM AGSIVAANRS AAQLLGVRVD
EVPGMALSRY AEDFDLPELV RANKTRINGL RVKIKGDVFL ADIAPLQNEH DDSEALAGAV
LTLHRADRVG ERIYHVRKQE LRGFDSIFQS SKVMAAVVKE ARRMAPLDAP LLIEGETGTG
KELLARACHL ASPRGQSPFM ALNCAGLPES MAETELFGYG PGAFEGARPE GKLGLLELTA
GGTLFLDGVG EMSPRLQAKL LRFLQDGCFR RVGSDEEVYL DVRVICATQV DLSELCARGE
FRQDLYHRLN VLSLHIPPLR ECLDGLEPLV EHFLDSASRQ IGCPLPKLAP QAFERMAHYH
WPGNVRQLEN VLFQAVSLCD GGTVKAEHIR LPDYGAPQPL GEFSVEGSLD DILGRFEKAV
LERLFRDHPS SRQLGKRLGV SHTTIANKLR QHGLGRE
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