| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3045 |
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| Symbol | |
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| ID | 5107525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3370313 |
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| End bp | 3372673 |
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| Gene Length | 2361 bp |
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| Protein Length | 786 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640504302 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_001188531 |
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| Protein GI | 146308066 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTC TGCTGCTACC TGCGGTACTG TCCGCATTGA TGATCGCCGA AGTTCACGCC
GAGTCCTTCA CCATCTCCGA TATACGCGTC AACGGTCTCC AGCGGGTGTC CGCCGGTAGC
GTATTTGGCG CACTGCCGCT GAACGTGGGT GAGCAGGTCG ACGACCGCCA ACTGGTCGAT
GCCACCCGCT CCCTGTTCCG CACCGGTTTC TTCCAGGATA TCCAGCTCGG TCGCGATGGC
GACGTGCTGG TCATCACCGT GGTCGAGCGT CCTTCCATTT CCGGTATCGA AATCGAAGGC
AACAAGGCCA TCACCACCGA GGACCTGCTC AAGGGTCTGA ATCAGTCCGG CCTGGCCGAG
GGCGAGATCT TCCAGCGCGC CACGCTCGAA GGCGTGCGCA ACGAGCTGCA GCGCCAGTAC
GTGGCGCAGG GCCGCTACTC CGCGGAAATC CAGGCCGAAG TGATTCCCCA GCCGCGCAAC
CGCGTGGCGC TGAAGATCAC CATCAACGAG GGCACCGTCG CCGCCATTTC GCACATCAAC
GTGGTGGGCA ACACGGTATT CAGCGATGAA GACCTGACCG ACCTGTTCGA ACTGAAGACC
ACCAACTGGC TGTCGTTCTT CAAGAACGAC GACAAGTACG CTCGCGAAAA GCTGTCCGGT
GACTTGGAGC GTCTGCGCTC CTACTATCTG GACCGTGGTT ACATCAACAT GGATATCAGC
TCCACTCAGG TATCCATCAC CCCGGACAAG AAGCACGTCT ACATCACCGT CAACGTTGAA
GAGGGCGAGA AGTACAGCGT TCGCGACGTG AAACTGTCCG GTGACCTCAA GGTACCGGAA
GAAGACGTGC GCGCACTGCT GCTGGTGAAG GAAGGGCAGG TGTTCTCGCG CAAGGTGATG
ACCACCACCA GCGAGCTGAT CACCCGTCGC CTGGGTAACG AGGGCTACAC CTTCGCCAAC
GTCAACGGCG TGCCGGAAGC GCACGACGAG GACAACACCG TTTCCATCAC CTTCTTCGTC
GATCCGGGCA AGCGCGCCTA CGTCAACCGC ATCAACTTCC GCGGCAACAC CAAGTCCGAG
GACGAGGTGC TGCGTCGTGA GATGCGCCAG ATGGAAGGTG GCTGGGCCTC GACCTATCTG
ATCGATCAGT CCAAGGTTCG CCTCGAGCGT CTGGGCTTCT TCAAGGAAGT CAACGTCGAA
ACCCCGCAGG TGCCGGGCAC CGACGACCAG ATCGACGTCA ACTACAGCGT CGAAGAGCAG
CCGTCCGGCT CTATCACCGC CAGCGTCGGT TTCGCCCAGA ACGCCGGTCT GATCCTGGGT
GGCTCGATCA GTCAGAACAA CTTCCTGGGT ACCGGTAACC GCGTCAGCCT CGGCCTGACC
CGCAGCGAAT ACCAGACCCG TTACAGCTTC GGCTTCGTCG ATCCCTACTG GACCGTCGAC
GGCGTCAGCC TGGGCTACAA CGCCTTCTAC CGCACCACCG ACTACGACGA GCTCGATGTC
GATGTATCCA GCTACTCGGT CGACAGCCTG GGCGCCGGCA TCAACATCGG TTATCCGATC
AGCGAGACCG CGCGTCTGAC CTACGGTCTG ACCGTGCAGC AGGATACTAT CGATACCGGC
CGCTACACCG TCGACGAGAT CTTCGATTTC ATCGAGGCCG AAGGCGACAA TTACCTGAAC
TTCAAGGGCT CCATCGGCTG GTCCGAGTCG ACCCTCAACC GTGGCGTGCT GGCCAACCGT
GGTCACTCGC AGAGCCTGGT GCTAGAAACC ACCATTCCGG GCAGCGATCT GTCGTTCTAC
AAGCTCGACT ATCGCGGCCA GGTATTCAAA CCGATCAGCG ACACCTACAC CCTGCGCTTC
CATACCCAGC TGGGTTATGG CGACAGCTAT GGTTCCACCG CCGAATTGCC GTTCTACGAG
CATTACTATG CCGGTGGTTT CAACTCGGTA CGCGGCTTCA AGGACAGCAG CCTGGGGCCA
CGCAGTACGC CGAGCTCCGG CAACAAGCCT GGCACGCTCC GCGACCCGGA CCAGGATCCG
TTGCCGTTCG GCGGTAACGT GCTGGTGCAG GGCGGCGTCG AGATGCTGTT CCCCATGCCG
TTCGTCAAGG ATCAGCGCTC GCTGCGTACC GCGCTGTTCT GGGATGTGGG TAACGTCTTC
GATACCAACT GCTCATCGAG CCAGAAGAAG CTCAGCGACA GCTGCGACAT CGATTTCAGC
AACCTGGCCA GCTCCGTGGG TGTCGGCCTG ACCTGGATTA CCGCGCTCGG CCCGCTGAGC
TTCAGCCTGG CCATGCCGAT CAAGAAGCCG GATGATGCCG ATACTCAGGT CTTCCAGTTC
TCCCTGGGTC AGACCTTCTA A
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| Protein sequence | MKRLLLPAVL SALMIAEVHA ESFTISDIRV NGLQRVSAGS VFGALPLNVG EQVDDRQLVD
ATRSLFRTGF FQDIQLGRDG DVLVITVVER PSISGIEIEG NKAITTEDLL KGLNQSGLAE
GEIFQRATLE GVRNELQRQY VAQGRYSAEI QAEVIPQPRN RVALKITINE GTVAAISHIN
VVGNTVFSDE DLTDLFELKT TNWLSFFKND DKYAREKLSG DLERLRSYYL DRGYINMDIS
STQVSITPDK KHVYITVNVE EGEKYSVRDV KLSGDLKVPE EDVRALLLVK EGQVFSRKVM
TTTSELITRR LGNEGYTFAN VNGVPEAHDE DNTVSITFFV DPGKRAYVNR INFRGNTKSE
DEVLRREMRQ MEGGWASTYL IDQSKVRLER LGFFKEVNVE TPQVPGTDDQ IDVNYSVEEQ
PSGSITASVG FAQNAGLILG GSISQNNFLG TGNRVSLGLT RSEYQTRYSF GFVDPYWTVD
GVSLGYNAFY RTTDYDELDV DVSSYSVDSL GAGINIGYPI SETARLTYGL TVQQDTIDTG
RYTVDEIFDF IEAEGDNYLN FKGSIGWSES TLNRGVLANR GHSQSLVLET TIPGSDLSFY
KLDYRGQVFK PISDTYTLRF HTQLGYGDSY GSTAELPFYE HYYAGGFNSV RGFKDSSLGP
RSTPSSGNKP GTLRDPDQDP LPFGGNVLVQ GGVEMLFPMP FVKDQRSLRT ALFWDVGNVF
DTNCSSSQKK LSDSCDIDFS NLASSVGVGL TWITALGPLS FSLAMPIKKP DDADTQVFQF
SLGQTF
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