Gene Pmen_3009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3009 
SymbolrlmL 
ID5107490 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3332232 
End bp3334409 
Gene Length2178 bp 
Protein Length725 aa 
Translation table11 
GC content67% 
IMG OID640504267 
Product23S rRNA m(2)G2445 methyltransferase 
Protein accessionYP_001188496 
Protein GI146308031 
COG category[R] General function prediction only
[L] Replication, recombination and repair 
COG ID[COG0116] Predicted N6-adenine-specific DNA methylase
[COG1092] Predicted SAM-dependent methyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.30746 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.88031e-11 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCTGATC GTTACGAAAT CGTGCTGACC TGCCCCAAGG GCCTCGAAGG ACTATTGCTG 
GAAGAGGCCA GGGCACTGGG ACTGGAGGAG GCGCGCGAGC AGACTGCCGC GGTGCGTGGC
CAGGCCGAGC TGGAGGTCGC CTACCGCCTG TGCCTGTGGT CGCGCCTGGC CAACCGCGTG
CTGCTGGTGC TGTCGCGGTT TTCCATGAAT AACGCCGAGG AGCTCTACGA GGGCGTCAAG
GCGGTGGACT GGCGCGACCA CCTGGAGCCG GCCGGCAGCC TGGCGGTGGA GTTCAGCGGC
CACGGCTCGG GAATCGACAA CAGCCACTTC GGCGCGCTCA AGGTCAAGGA CGCCATCGTC
GACCGCCTGC GTACGGCCGG TGGCGAGCGG CCCAGCATCG ACAAGATCAA TCCGGACCTG
CGCGTGCATC TGCGTCTGGA TCGCGGCGAG GCCGTGCTGT CGCTGGACCT TTCCGGTCAC
AGCCTGCACC AGCGTGGCTA TCGCCTGCAG CAGGGGGCCG CGCCGCTCAA GGAAAACCTC
GCCGCCGCAG TGCTGATCCG CGCCGGCTGG CCGCGCATCG CCGCCGAGGG CGGCGCGCTG
GCCGACCCCA TGTGCGGTGT CGGCACCTTC CTCATCGAGG CGGCGCTGAT GGCCGCCGAT
GTGGCGCCCA ATCTCAAGCG CGAACGCTGG GGGTTCTCCA ACTGGCTCGG GCATGTGCCG
GCGATCTGGA AGAAGCTGCA TGCCGAGGCC GAACAGCGCG CGGCGGCCGG CCTGGCCAGG
CCGCCCCTGT GGATTCGCGG CTATGAAGCC GACCCACGGC TGATCCAGCC TGGGCGCAAT
AACGTCGAGC GCGCCGGGCT GTCCGACTGG GTGAAGATCT ACCAGGGCGA GCTGGGCAGT
TTCGAGCCGC GGCCGGACCA GAACCAGAAG GGCCTGGTGA TCAGCAACCC GCCCTATGGC
GAGCGCCTGG GCGACGAAGC CAGTCTGCTG TATCTCTATC AGAACCTTGG CGAGCGCCTG
CGTCAGGCTT GCCTGGGCTG GGAGGCAGCG GTGTTCACCG GAGCTCCCGA GCTGGGCAAG
CGCATGGGCC TGCGCAGCCA CAAGCAGTAT TCGTTCTGGA ACGGCGCGCT GGCGTGCAAG
CTGCTGCTGA TCAAGGTGCA GACCGAGCAG TTCGTCACCG GCGAGCGGCG CACCAGGACC
GAGGACGAAC CAGTGGCGGA GGCGTCGTCA CAGGCGCGCC TGTCCGAGGG GGGGCAGATG
TTCGCCAACC GCCTGCAGAA GAACCTCAAG CAACTGGGCA AGTGGGCGCG CCGCGAGGGG
GTGGAGTGCT ACCGCCTGTA CGATGCCGAT ATGCCCGAGT ACGCCCTGGC GGTGGACCTG
TACCGCGACT GGGTGCACGT GCAGGAATAT GCCGCGCCGC GTTCGGTCGA TCCGGACAAG
GCGCAGGCGC GTCTGCTCGA TGCCCTGGCC GCGATCCCCC AGGCGCTGGG CGTGGCGCAG
AGCCGAGTGG CGATCAAGCG CCGCGAGCGC CAGACCGGCA CCAAGCAGTA TCAGCGCCAG
GCTGCCCAGG GCCAGTTCAT GGAGGTGAGC GAAGGCGGCG TCAAACTGCT GGTCAACCTC
ACCGACTATC TGGATACCGG CCTGTTCCTT GATCACCGTC CGCTGCGCCT GCGCATCCAG
CGTGAGGCGG CCGGCAAGCG TTTCCTCAAC CTGTTCTGCT ACACCGCCAC GGCCACCGTG
CATGCGGCCA AGGGCGGGGC ACGCAGCACT ACCAGCGTCG ACCTGTCGAA AACCTACCTG
GACTGGGCGC GGCGCAACCT GTCGCTCAAC GGCTTTTCCG ACAAGCATCG CCTGGAGCAG
GGCGACGTGA TGGCCTGGCT GGCCGAGGAT CGTGGCGAGT ACGACCTGAT CTTCATCGAC
CCGCCGACCT TCTCCAACTC CAAGCGTATG GAAGGTGTGT TCGATGTGCA GCGCGACCAC
GTCGAGTTGC TCGACCTGGC CATGGCCCGC CTGGCCGGTG GCGGGGTGCT GTACTTCTCC
AACAACTTCC GCAAGTTCCA GCTCGACGAG AGTCTGGTGG CGCGTTACCA GGTCGAGGAG
ATCAGCGCGC AGACCCTGGA TCCGGACTTT GCCCGTAACC CGAAGATCCA CCGCGCCTGG
CGCTTCACCG CTCGCTGA
 
Protein sequence
MSDRYEIVLT CPKGLEGLLL EEARALGLEE AREQTAAVRG QAELEVAYRL CLWSRLANRV 
LLVLSRFSMN NAEELYEGVK AVDWRDHLEP AGSLAVEFSG HGSGIDNSHF GALKVKDAIV
DRLRTAGGER PSIDKINPDL RVHLRLDRGE AVLSLDLSGH SLHQRGYRLQ QGAAPLKENL
AAAVLIRAGW PRIAAEGGAL ADPMCGVGTF LIEAALMAAD VAPNLKRERW GFSNWLGHVP
AIWKKLHAEA EQRAAAGLAR PPLWIRGYEA DPRLIQPGRN NVERAGLSDW VKIYQGELGS
FEPRPDQNQK GLVISNPPYG ERLGDEASLL YLYQNLGERL RQACLGWEAA VFTGAPELGK
RMGLRSHKQY SFWNGALACK LLLIKVQTEQ FVTGERRTRT EDEPVAEASS QARLSEGGQM
FANRLQKNLK QLGKWARREG VECYRLYDAD MPEYALAVDL YRDWVHVQEY AAPRSVDPDK
AQARLLDALA AIPQALGVAQ SRVAIKRRER QTGTKQYQRQ AAQGQFMEVS EGGVKLLVNL
TDYLDTGLFL DHRPLRLRIQ REAAGKRFLN LFCYTATATV HAAKGGARST TSVDLSKTYL
DWARRNLSLN GFSDKHRLEQ GDVMAWLAED RGEYDLIFID PPTFSNSKRM EGVFDVQRDH
VELLDLAMAR LAGGGVLYFS NNFRKFQLDE SLVARYQVEE ISAQTLDPDF ARNPKIHRAW
RFTAR