| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3003 |
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| Symbol | |
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| ID | 5107484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3323366 |
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| End bp | 3324529 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640504261 |
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| Product | diguanylate phosphodiesterase |
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| Protein accession | YP_001188490 |
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| Protein GI | 146308025 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0000176635 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCTCGACG GATTGCCTTT CGCCGTCTTC CAACCCTTCA TCGACACGGC CACCGGCCGC
ATAGCTGGCG TCGAGGCGCT GGCTCGACTG CGCGATAGCG ATGGCCTGGT GCACTCTGCT
GGGCCCTTGT TCGCCGACCC GAAAACGCCC CCGGCCGCCC TGCGCCGCCT CGACCGCCAG
GTGCGCGAGG ACGCCTTGCG CCGTTTTCAC CAGGCACCCA AGGACTGGTT TCTCAGCCTG
AACATCTCGC CACGCTGGAT CAGCCGCCTG CGCCCGACCC AGCCCTTGCC CAGCCTGCTC
CAACTGCAAC GCAGCGGCAT CGACCCGGCA CGCATCGTCT TCGAGATCAC CGAACTGGGC
GGCGCCAGCC AGCGCCTGCC CAGCGTCGTC TCGCGCTACC GCGAGGCCGG CGCGCGCATC
GCCATCGATG ACTTCGGCGC CGGCTACTCG CAGCTCGACC GCGTGCTGGC GCTGCAGCCG
GACATTCTCA AGCTGGACAT GCGCCTGTTC CAGGAAGCAG CCCGCGGCGG CCCCAGCGGC
GAGGTGGTCA AGGCACTGGC CCAGATGGCG GAGAAGACCG GCTGCTGGAT CATCGCCGAA
GGCGTGGAAA CCGAAGCCGA GCTGAACTTT GCCCTGGAGT GCGGCGCCCG CTACGTGCAG
GGCTTCCTGT TCGCCAGAGC GGAGGAGGAA TTCTTCGCCA GCGACGCCTT CGTCGGACGT
TTCGCGCGTC TGCGCGACAG CTACGTGCAA CAGAAGCTCG CCGAACGCGC CCGCCTGGTG
AGCCTGCGCC AGCAGTTGGC CGAACTGATG GGCGAACTCC GGCAGTGGGC CGAAAGCGGC
GCCTCGGCAG CTAGCCTGCT GGCGCCGGAC AACTATCCCT GGCTACTGCG CATCTACCAA
TGCGATCGCC ATGGCACCCA ACTGACGCCG AACCTGGAGT GGCGCCAACA GACCTGGCAC
GCCGATGACC GCTACCTCGG GCACAACTGG TCATGGCGCC CCTACTTCTA TCAACTGCTG
GCCGAAGGCT GGGAAGAGCG GCGCCTGACC CTCTCCACCA CCTACCGCGA CGCCACCAGC
AACCAGTACT GCCTGACCGC CGGCCAGTTC ATCGACAACG GCCGCCGCCT GCTGCTGGTG
GATATCGACG CTGCGGGCCT GTAG
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| Protein sequence | MLDGLPFAVF QPFIDTATGR IAGVEALARL RDSDGLVHSA GPLFADPKTP PAALRRLDRQ
VREDALRRFH QAPKDWFLSL NISPRWISRL RPTQPLPSLL QLQRSGIDPA RIVFEITELG
GASQRLPSVV SRYREAGARI AIDDFGAGYS QLDRVLALQP DILKLDMRLF QEAARGGPSG
EVVKALAQMA EKTGCWIIAE GVETEAELNF ALECGARYVQ GFLFARAEEE FFASDAFVGR
FARLRDSYVQ QKLAERARLV SLRQQLAELM GELRQWAESG ASAASLLAPD NYPWLLRIYQ
CDRHGTQLTP NLEWRQQTWH ADDRYLGHNW SWRPYFYQLL AEGWEERRLT LSTTYRDATS
NQYCLTAGQF IDNGRRLLLV DIDAAGL
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