Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2983 |
Symbol | |
ID | 5107701 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 3307979 |
End bp | 3308575 |
Gene Length | 597 bp |
Protein Length | 198 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640504241 |
Product | periplasmic nitrate reductase subunit NapC |
Protein accession | YP_001188470 |
Protein GI | 146308005 |
COG category | [C] Energy production and conversion |
COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
TIGRFAM ID | [TIGR02161] periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.000569664 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.0718991 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCAC TACTGGCCCT GCTCAGGGAA TACTGGGGCA TCCTGCGTCG TCCGAGCGTG CATTACAGCC TGGGCTTTCT CACCCTGGGC GGCTTCATCG CCGGGATCAT CTTCTGGGGC GGCTTCAACA CCGCGCTGGA AGCCACCAAC ACCGAGCAGT TCTGCATCTC CTGTCACGAG ATGCGCGACA ACGTGTTCGT CGAGCTGCAG GACACCATTC ACTACAGCAA CCGCTCCGGC GTGCGCGCCA CCTGCCCGGA CTGCCATGTG CCGCACCAGT GGACGGACAA GATCGCGCGC AAGATGCAGG CGTCGAAGGA GGTCTGGGGC AAGATCTTCG GCACCATCAA CACCCGCGAC AAGTTTCTGG AAAAACGCCG CGAGCTGGCC GAGCACGAAT GGGCACGGCT CAAGGCCAAC GACTCGCTGG AATGCCGCAA CTGCCACAAC TTCGATTACA TGGACTTCAC CAAGCAGAGC CCGCGCGCCC GGCAGATGCA TTCCAGCGCG CTGGCCAGCG GCGAGGCCAC CTGCATCGAT TGCCACAAGG GCATCGCCCA CCAGTTGCCG GATATGAGCG GGGTGCCCGG TTGGTGA
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Protein sequence | MKSLLALLRE YWGILRRPSV HYSLGFLTLG GFIAGIIFWG GFNTALEATN TEQFCISCHE MRDNVFVELQ DTIHYSNRSG VRATCPDCHV PHQWTDKIAR KMQASKEVWG KIFGTINTRD KFLEKRRELA EHEWARLKAN DSLECRNCHN FDYMDFTKQS PRARQMHSSA LASGEATCID CHKGIAHQLP DMSGVPGW
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