| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2942 |
|---|
| Symbol | |
|---|
| ID | 5107660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3262892 |
|---|
| End bp | 3263752 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640504197 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_001188429 |
|---|
| Protein GI | 146307964 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00975184 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCG TCGCCGTGCT GCGCCTGCCG CTGGATACCG ATCTGAGCGG TTTCGTGGCC
TTGCTCAGGC GCCTGGGCGT GCCGCATCGC GTGGCCGAGG AGGGCGGGCT GCAGGTGCTC
TGGGTGCCGG GCGAACAGCT GGCCGAGCAG GTACGTGAGC TCTATGCGCA GCATCCCGAC
GGCGAGGCCG GGGAGCTACT GCCCGAGCCC GTCCAGCCGG TGCGTGAGGG GATGCTCAGG
CAATTGCTGG CCAATCCGCT CACGGCCGCC GTGCTGCTGC TGACCTTCGT GGTGTTCGCC
GTGACCGCTG CCGGTGAGAA CTATGCCGCG ATCCGCTGGC TGAGCTTCGT CGACTTTCGC
ATCGACGGCG AGCACATCTA CCTGACCTAT CTGGATGCCA CCCTGGGCAG CGGTCAATGG
TGGCGCCTGA TCACGCCGAT GCTGATCCAC TTCGGCTGGC TGCACCTGGC GATGAACAGC
CTGTGGTACT GGGAGCTGGG CCGGCGTATC GAGTTTCGCC AGGGCGCCCT GGGGCTGCTC
GGGTTGACCT TGCTGTTCGG CCTGGCGTCG AATTTCGCCC AGTATTGGTG GACGGGACCG
TCATTGTTCG GCGGGCTTTC CGGCGTGCTT TACGGCCTGC TCGGGCATTG CTGGATCTAC
CAGCGCCTGG CACCGAACCC GGCTTATCGT CTGCCGCCCG GCGTGCTGGT GATGATGCTG
GCCTGGCTGC TGATCTGCAT GACCGGCATT TTCGAGCTGT TGCAGTTCGG CGCCATCGCC
AACGCCGCAC ATGTCGGCGG CCTGCTCACC GGCTGCCTGA CCGGGTTGCT TGGCGGTATG
CTGGCCCGAC GAACGATTTA A
|
|---|
| Protein sequence | MTAVAVLRLP LDTDLSGFVA LLRRLGVPHR VAEEGGLQVL WVPGEQLAEQ VRELYAQHPD
GEAGELLPEP VQPVREGMLR QLLANPLTAA VLLLTFVVFA VTAAGENYAA IRWLSFVDFR
IDGEHIYLTY LDATLGSGQW WRLITPMLIH FGWLHLAMNS LWYWELGRRI EFRQGALGLL
GLTLLFGLAS NFAQYWWTGP SLFGGLSGVL YGLLGHCWIY QRLAPNPAYR LPPGVLVMML
AWLLICMTGI FELLQFGAIA NAAHVGGLLT GCLTGLLGGM LARRTI
|
|---|
| |