Gene Pmen_2924 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2924 
Symbol 
ID5107642 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3233114 
End bp3234331 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content68% 
IMG OID640504179 
Productgeneral secretion pathway protein F 
Protein accessionYP_001188411 
Protein GI146307946 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID[TIGR02120] general secretion pathway protein F 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.646431 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.200315 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCCT TCGAATACAT CGCCCTGGAT GGGCGCGGTC GCCAGCAGAA GGGCGTGCTG 
GAGGCCGACA GCGCGCGCCA GGTGCGCCAG TTGTTGCGCG AGCGCCAGCT GGCACCGCTG
GAGGTCAAGG CCACGCGCAC CCGCGAGCAA GCCGGCGGCG GCGCGCGTCT GGGCTTCGCC
CGCGGGCTTT CGGCGCGCGA CCTGGCGCTG GTAACCCGGC AGCTGGCCAC CCTGGTGCAG
GCGGCCCTGC CCATCGAGGA GGCGCTGCGC GCCGCGGCTG CGCAGTCGAC CAACGCCCGT
ATTCAGGGAA TGCTGCTGGC GGTGCGCGCA CGCGTGCTGG AAGGTCACAG CCTGGCCGGC
AGTCTGCGCG AGTTTCCCGC CGCCTTTCCC GAGCTATACC GCGCCACGGT GGCGGCGGGC
GAGCATGCCG GGCATCTCGG GCCAGTGCTG GAACAGCTGG CCGATTACAC CGAGCAGCGT
CAGCAGTCGC GGCAGAAGGT CCAGCTGGCG CTGCTGTATC CCTTGATCCT GATGTGCGCA
TCCTTGCTGA TCGTCGGCTT TCTGCTGGGT TACGTGGTGC CGGACGTGGT CAAGGTCTTC
GTCGATTCCG GGCAGACCCT GCCGACGCTG ACCCGCGTGC TGATCGCCGT GAGCGACTGG
GTCAAGGCCT GGGGGCTGGT GGCCGTGGTG GTGCTGGCGC TGGCGATCAT CGCGCTGCGC
GCGGCGCTGC GCGATGAGGC GATGCGCCTG CGCTGGCATG CCTTTTTGCT GCGCGTGCCG
CTGCTCGGCC GTCTGGGCCG TGCCACGGAC TGCGCACGTT TCGCGTCCAC CCTGGCGATC
CTCACGCGCA GCGGCGTGCC GCTGGTCGAG GCGCTGGCAA TCGCCGGCGA GGTGATCGGC
AACCGGGTGA TTCGTGGCGA GGTGCTGGTG GCTGCGCAGA AGGTGCGAGA GGGCGGCAGT
CTGACCCGCT CGCTGGAGGC CACCGGGCAG TTTCCGCCGA TGATGCTGCA CATGATCGCC
AGCGGCGAGC GCTCCGGCGA GCTGGACCAG ATGCTGGCAC GCACGGCGAA GAACCAGGAA
AACGACCTGA GCGCGCAGAT CGCCCTGCTG GTCGGATTGT TCGAACCGTT CATGCTGGTG
TTCATGGGGG CGGTGGTGCT GGTCATCGTA CTGGCCATCC TGCTGCCGAT TCTTTCGTTG
AACCAAATGG TGGGATAA
 
Protein sequence
MAAFEYIALD GRGRQQKGVL EADSARQVRQ LLRERQLAPL EVKATRTREQ AGGGARLGFA 
RGLSARDLAL VTRQLATLVQ AALPIEEALR AAAAQSTNAR IQGMLLAVRA RVLEGHSLAG
SLREFPAAFP ELYRATVAAG EHAGHLGPVL EQLADYTEQR QQSRQKVQLA LLYPLILMCA
SLLIVGFLLG YVVPDVVKVF VDSGQTLPTL TRVLIAVSDW VKAWGLVAVV VLALAIIALR
AALRDEAMRL RWHAFLLRVP LLGRLGRATD CARFASTLAI LTRSGVPLVE ALAIAGEVIG
NRVIRGEVLV AAQKVREGGS LTRSLEATGQ FPPMMLHMIA SGERSGELDQ MLARTAKNQE
NDLSAQIALL VGLFEPFMLV FMGAVVLVIV LAILLPILSL NQMVG