Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2924 |
Symbol | |
ID | 5107642 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3233114 |
End bp | 3234331 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640504179 |
Product | general secretion pathway protein F |
Protein accession | YP_001188411 |
Protein GI | 146307946 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.646431 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.200315 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTGCCT TCGAATACAT CGCCCTGGAT GGGCGCGGTC GCCAGCAGAA GGGCGTGCTG GAGGCCGACA GCGCGCGCCA GGTGCGCCAG TTGTTGCGCG AGCGCCAGCT GGCACCGCTG GAGGTCAAGG CCACGCGCAC CCGCGAGCAA GCCGGCGGCG GCGCGCGTCT GGGCTTCGCC CGCGGGCTTT CGGCGCGCGA CCTGGCGCTG GTAACCCGGC AGCTGGCCAC CCTGGTGCAG GCGGCCCTGC CCATCGAGGA GGCGCTGCGC GCCGCGGCTG CGCAGTCGAC CAACGCCCGT ATTCAGGGAA TGCTGCTGGC GGTGCGCGCA CGCGTGCTGG AAGGTCACAG CCTGGCCGGC AGTCTGCGCG AGTTTCCCGC CGCCTTTCCC GAGCTATACC GCGCCACGGT GGCGGCGGGC GAGCATGCCG GGCATCTCGG GCCAGTGCTG GAACAGCTGG CCGATTACAC CGAGCAGCGT CAGCAGTCGC GGCAGAAGGT CCAGCTGGCG CTGCTGTATC CCTTGATCCT GATGTGCGCA TCCTTGCTGA TCGTCGGCTT TCTGCTGGGT TACGTGGTGC CGGACGTGGT CAAGGTCTTC GTCGATTCCG GGCAGACCCT GCCGACGCTG ACCCGCGTGC TGATCGCCGT GAGCGACTGG GTCAAGGCCT GGGGGCTGGT GGCCGTGGTG GTGCTGGCGC TGGCGATCAT CGCGCTGCGC GCGGCGCTGC GCGATGAGGC GATGCGCCTG CGCTGGCATG CCTTTTTGCT GCGCGTGCCG CTGCTCGGCC GTCTGGGCCG TGCCACGGAC TGCGCACGTT TCGCGTCCAC CCTGGCGATC CTCACGCGCA GCGGCGTGCC GCTGGTCGAG GCGCTGGCAA TCGCCGGCGA GGTGATCGGC AACCGGGTGA TTCGTGGCGA GGTGCTGGTG GCTGCGCAGA AGGTGCGAGA GGGCGGCAGT CTGACCCGCT CGCTGGAGGC CACCGGGCAG TTTCCGCCGA TGATGCTGCA CATGATCGCC AGCGGCGAGC GCTCCGGCGA GCTGGACCAG ATGCTGGCAC GCACGGCGAA GAACCAGGAA AACGACCTGA GCGCGCAGAT CGCCCTGCTG GTCGGATTGT TCGAACCGTT CATGCTGGTG TTCATGGGGG CGGTGGTGCT GGTCATCGTA CTGGCCATCC TGCTGCCGAT TCTTTCGTTG AACCAAATGG TGGGATAA
|
Protein sequence | MAAFEYIALD GRGRQQKGVL EADSARQVRQ LLRERQLAPL EVKATRTREQ AGGGARLGFA RGLSARDLAL VTRQLATLVQ AALPIEEALR AAAAQSTNAR IQGMLLAVRA RVLEGHSLAG SLREFPAAFP ELYRATVAAG EHAGHLGPVL EQLADYTEQR QQSRQKVQLA LLYPLILMCA SLLIVGFLLG YVVPDVVKVF VDSGQTLPTL TRVLIAVSDW VKAWGLVAVV VLALAIIALR AALRDEAMRL RWHAFLLRVP LLGRLGRATD CARFASTLAI LTRSGVPLVE ALAIAGEVIG NRVIRGEVLV AAQKVREGGS LTRSLEATGQ FPPMMLHMIA SGERSGELDQ MLARTAKNQE NDLSAQIALL VGLFEPFMLV FMGAVVLVIV LAILLPILSL NQMVG
|
| |