| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2903 |
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| Symbol | alaS |
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| ID | 5107818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3211727 |
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| End bp | 3214405 |
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| Gene Length | 2679 bp |
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| Protein Length | 892 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640504158 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_001188390 |
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| Protein GI | 146307925 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0357783 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCCCT TTGCCGGCTT TTGCCGTGGC CGCCTGTTTC CTTGGAAGAC CCCTATGAAA
AGCGCAGAAA TCCGTGAAGC CTTCCTGAGC TTCTTCGAAG AAAAAGGGCA CACCCGTGTC
GCTTCCAGCT CGCTGATCCC GGCGAACGAC CCGACCCTGC TGTTCACCAA CGCGGGCATG
AACCAGTTCA AGGACTGCTT CCTGGGCCTG GAAAAGCGCG CCTACACCCG CGCCACCACC
AGCCAGAAGT GCGTGCGTGC CGGCGGCAAG CACAACGACC TGGAAAACGT CGGCTACACC
GCGCGCCACC ACACCTTCTT CGAAATGCTG GGCAACTTCA GCTTCGGCGA CTACTTCAAG
CGCGATGCCA TCCATTACGC CTGGGAATTC CTCACCTCCG ACAAGTGGCT GAACCTGCCC
AAGGAAAAGC TCTGGGTCAC CGTCTATGCC ACCGATGACG AAGCCTACGA GATCTGGAAC
AAGGAAATCG GCGTACCGGC CGAGCGCATG ATCCGCATCG GCGACAACAA GGGCGCGCCC
TATGCGTCCG ACAACTTCTG GGCAATGGGC GACACCGGCC CGTGCGGCCC GTGCACCGAG
ATCTTCTTCG ACCACGGCGA GCACATCTGG GGCGGCCCGC CCGGCAGCCC GGAAGAAGAT
GGCGACCGCT ATATCGAGAT CTGGAACAAC GTGTTCATGC AGTTCAACCG TACTGCCGAT
GGCGTGCTGC ACCCGCTGCC GGCGCCCTCG GTGGACACCG GCATGGGCCT GGAGCGCATC
AGCGCCGTGC TGCAGCACGT CAATTCCAAC TACGAGATCG ACCTGTTCCA GAACCTGCTG
GCCGCCTCGG CCAAGGCCAT CGGCTGCGCC AACGAAGGAC AGGCTTCGCT GAAGGTGGTG
GCGGACCACA TCCGCTCCTG CAGCTTCCTG ATCGCCGACG GGGTGACCCC GTCCAACGAA
GGCCGTGGCT ACGTGCTGCG CCGCATCGTG CGTCGCGCCT GCCGTCACGG CAACAAGCTG
GGTGCCAAGG GCAGCTTCTT CTACCAGATC GTCGCCGCCC TGGTGGCCGA GATGGGCGAA
GCCTTCCCCG AGCTCAAGCA GCAGCAGGCG CACATCGAGC GCGTGCTGAA GACCGAGGAA
GAGCAGTTCG CCAAGACCCT CGAGCAGGGC CTGAAGATCC TCGAGCAGGA TCTGGCCGGC
CTGCAGGGCT CGGTCATCCC GGGCGACATC GTGTTCAAGC TGTACGACAC CTACGGCTTC
CCGGTCGACC TGACTGCCGA CATCGCCCGC GAGCGCGAAC TGTCGGTGGA CGAAGAAGGC
TTCGAGCGCG AGATGGAGGC GCAGCGCGAG CGCGCTCGTT CCGCCAGCGC CTTCGGCATG
GATTACAACG CGCTGGTCAA GGTCGACGCC GACACCCGCT TCCTCGGCTA CGAAGGCACC
AGCGGCAGCG GCAAGATCAT TGCCCTGTTC AAGGCAGGTG CTGCGGTCGA CAGCCTCGCC
GAAGGCGAGG AGGGAGTGGT GGTGCTGGAT CAGACTCCGT TCTACGCCGA ATCCGGCGGC
CAGATCGGCG ACTGCGGTTA TCTCGAGAGC GCCGGCATGC GCTTCGACGT GCGTGACACC
ACCAAGGCCG GCGGCGCCTT CCTGCACCAC GGGGTGGTGG CCAAGGGCGG CCTCTCCGTC
GGCACCAGCG TCAAGGCCGA GGCCGAGGCC AGCGTGCGTC AGGCCACCGC GCTGAACCAC
TCTGCCACCC ACCTGCTGCA CGCCGCGCTG CGTCAGGTGC TGGGCGATCA CGTACAGCAG
AAGGGCTCGC TGGTCGACAG TCAGCGTCTG CGCTTCGACT TCAGCCACTT CGAGGCGATC
AAGCCCGAGC AGCTGAAACA GCTGGAAGAC ATCGTCAACG CCGAGATTCG CAAGAACTCC
GAGGTCGAGA CCGAGGAAAC CGATATCGAA ACCGCCAAGG CCAAGGGCGC CATGGCGCTG
TTCGGCGAGA AGTACGGCGA CCAGGTGCGC GTGCTGAGCA TGGGCGGCGA CTTCTCCGTC
GAGCTCTGCG GCGGTACCCA TGTCTCGCGT ACCGGCGACA TCGGCCTGTT CAAGATCACC
AGCGAAGGTG GCGTGGCTGC TGGCGTGCGC CGTATCGAAG CGGTGACCGG TGCCGCTGCG
CTGGCTTGGC TGAACGCGGC CGAGGAGCAG CTCAAGGAAG CCGCTTCCCT GGTCAAGGGC
AGTCGCGACA ACGTGCTGGA CAAGCTCTCT GCCCTGATCG AGCGCAACCG TCAGCTGGAA
AAGGAGCTGG AGCAGCTCAA GGCCAAGGCC GCCAGCGCCG CCGGTAACGA TCTGGCCGGT
TCCGCCGTGG ACTTGAAGGG CACCAAGGTG CTGGCTGCGC GTCTTGACGG CCTGGATGGC
AAGGCCCTGC TGGCGCTGGT CGACCAGTTG AAGAACAAGC TGGGCAGCGG CGTGATCCTG
CTCGGCGGCG TGTTCGACGA GAAGGTGGTG CTGGTGGCCG GCGTGACCCA GGACCTGACT
GCCAAGCTCA AGGCTGGCGA CCTGATGCGT CAGGCCGCAG CTGCCGTGGG CGGCAAGGGT
GGTGGTCGTC CGGACATGGC CCAGGGCGGC GGCGTCGATG CCGGCAAGCT GGACGAAGCG
CTGGCACTGG CTGCGACTTT CGTCGAGCAG GGCCTGTAA
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| Protein sequence | MRPFAGFCRG RLFPWKTPMK SAEIREAFLS FFEEKGHTRV ASSSLIPAND PTLLFTNAGM
NQFKDCFLGL EKRAYTRATT SQKCVRAGGK HNDLENVGYT ARHHTFFEML GNFSFGDYFK
RDAIHYAWEF LTSDKWLNLP KEKLWVTVYA TDDEAYEIWN KEIGVPAERM IRIGDNKGAP
YASDNFWAMG DTGPCGPCTE IFFDHGEHIW GGPPGSPEED GDRYIEIWNN VFMQFNRTAD
GVLHPLPAPS VDTGMGLERI SAVLQHVNSN YEIDLFQNLL AASAKAIGCA NEGQASLKVV
ADHIRSCSFL IADGVTPSNE GRGYVLRRIV RRACRHGNKL GAKGSFFYQI VAALVAEMGE
AFPELKQQQA HIERVLKTEE EQFAKTLEQG LKILEQDLAG LQGSVIPGDI VFKLYDTYGF
PVDLTADIAR ERELSVDEEG FEREMEAQRE RARSASAFGM DYNALVKVDA DTRFLGYEGT
SGSGKIIALF KAGAAVDSLA EGEEGVVVLD QTPFYAESGG QIGDCGYLES AGMRFDVRDT
TKAGGAFLHH GVVAKGGLSV GTSVKAEAEA SVRQATALNH SATHLLHAAL RQVLGDHVQQ
KGSLVDSQRL RFDFSHFEAI KPEQLKQLED IVNAEIRKNS EVETEETDIE TAKAKGAMAL
FGEKYGDQVR VLSMGGDFSV ELCGGTHVSR TGDIGLFKIT SEGGVAAGVR RIEAVTGAAA
LAWLNAAEEQ LKEAASLVKG SRDNVLDKLS ALIERNRQLE KELEQLKAKA ASAAGNDLAG
SAVDLKGTKV LAARLDGLDG KALLALVDQL KNKLGSGVIL LGGVFDEKVV LVAGVTQDLT
AKLKAGDLMR QAAAAVGGKG GGRPDMAQGG GVDAGKLDEA LALAATFVEQ GL
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