Gene Pmen_2874 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2874 
Symbol 
ID5107273 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3182662 
End bp3184056 
Gene Length1395 bp 
Protein Length464 aa 
Translation table11 
GC content67% 
IMG OID640504125 
Productsodium:neurotransmitter symporter 
Protein accessionYP_001188361 
Protein GI146307896 
COG category[R] General function prediction only 
COG ID[COG0733] Na+-dependent transporters of the SNF family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.673413 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCAAG ACAGCATCGC CACCGGCACC TTCGCCGGTG CCTCCAGCAG CGCCGGCCGA 
GGCCTGTGGT CGTCGCGCTG GGTGTTCTTC CTCGCCGCCA CCGGCTCGGC CGTGGGCCTG
GGCAATATCT GGAAGTTTCC CTATATCACC GGGCAGAACG GCGGCGGCGC CTTCGTCCTG
GTCTACCTGG CGTGCATCCT GGCCATCGGC ATCCCGCTGC TGATGACCGA GGTGATGATC
GGCCGCCGCG GTCGTGCCAA CCCGGAAGGC GCCTTCGCCG CGCTGGCCAG GGAAGCACGG
GCCAGTCGGC ACTGGCGCTG GCTGGGTACG CTGGTGGTGC TGACCGGCTT TCTCATCCTC
AGTTTCTATG CGGTGATCGC CGGTTGGGCC GTGGCCTATA CACCCACGGC CATGACCGGT
GGCTTCGCCG GGCTGAACGG GGAGAGCAGC GGTGCGCTGT TCGGCGCCAT GCTGGCCGAC
CCCTGGAAGC TGGCGGGCTA CGGCACTCTA GTACTGGTAC TGACCCTCGG TATCGTCGCC
TTCGGCGTGC GCGGCGGCCT GGAGCGCTCG CTGCGTTTCC TCATGCCGGG GCTGTTCATC
CTGCTGCTGG TGCTGGTGGG CTATGCCGCC ACCACCGGGC ATTTCATGCA GGCGGTGCAC
TTTCTCTTCG ACGCCGACTT CAGCAAGCTC AGCGCCGCGG GCGTGCTGGC CGCGCTGGGG
CATGCCTTCT TCACCCTGAG CCTGGCCAGC GGCGCGATGA TGGCCTACGG CTCCTACCTG
CCGGCCGGCA CCTCGATCGC CAAGACCGCG CTGATGGTCG CCCTGGCCGA TACCGGCGTG
GCGCTGCTGG CCGGTCTGGC GATCTTCCCG CTGGTGTTCG CCAACGGCCT GGAGCCGGGC
GCAGGGCCGG GGCTGATCTT CGTCACCCTG CCGATCGCCT TCGGCCAGAT GCCCCTGGGC
CAACTGGTGG GCGGGCTGTT CTTCATCATG CTGGCGATCG CCGCGCTGAC TTCGGCGATT
TCCCTGAGCG AGCCGACCAT CGCCTGGCTG ACCGAGAAGT TCGGCATCGG CCGTTTCAAG
GCGGTAGCGC TCAGCGGTAT CGCCCTGTGG CTGCTGAGCC TGGGCACGGT GCTGTCGTTC
AATGCCTGGA GCGAGGTGAC CCTGCTGGGC AAGACCTTCT TCGACAGCCT GGATTTCCTC
ACCACCAACC TGCTGATGCC GCTGGGCGGC CTGGCCACCG TGCTGTTCGC CGGCTGGGCG
CTGAGCCGCA AGACCGTGCA GCAGTCCATC GGCATCGACC AGCCGCAGCT GTTCTCGCTG
TGGTGGCAGG TGCTGCGCGT GATCACCCCG CTGGGCATCC TGGTGGTGTT CCTGCACAGC
CTCGGGTTGT TCTGA
 
Protein sequence
MSQDSIATGT FAGASSSAGR GLWSSRWVFF LAATGSAVGL GNIWKFPYIT GQNGGGAFVL 
VYLACILAIG IPLLMTEVMI GRRGRANPEG AFAALAREAR ASRHWRWLGT LVVLTGFLIL
SFYAVIAGWA VAYTPTAMTG GFAGLNGESS GALFGAMLAD PWKLAGYGTL VLVLTLGIVA
FGVRGGLERS LRFLMPGLFI LLLVLVGYAA TTGHFMQAVH FLFDADFSKL SAAGVLAALG
HAFFTLSLAS GAMMAYGSYL PAGTSIAKTA LMVALADTGV ALLAGLAIFP LVFANGLEPG
AGPGLIFVTL PIAFGQMPLG QLVGGLFFIM LAIAALTSAI SLSEPTIAWL TEKFGIGRFK
AVALSGIALW LLSLGTVLSF NAWSEVTLLG KTFFDSLDFL TTNLLMPLGG LATVLFAGWA
LSRKTVQQSI GIDQPQLFSL WWQVLRVITP LGILVVFLHS LGLF