Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2874 |
Symbol | |
ID | 5107273 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3182662 |
End bp | 3184056 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640504125 |
Product | sodium:neurotransmitter symporter |
Protein accession | YP_001188361 |
Protein GI | 146307896 |
COG category | [R] General function prediction only |
COG ID | [COG0733] Na+-dependent transporters of the SNF family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 0.673413 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCAAG ACAGCATCGC CACCGGCACC TTCGCCGGTG CCTCCAGCAG CGCCGGCCGA GGCCTGTGGT CGTCGCGCTG GGTGTTCTTC CTCGCCGCCA CCGGCTCGGC CGTGGGCCTG GGCAATATCT GGAAGTTTCC CTATATCACC GGGCAGAACG GCGGCGGCGC CTTCGTCCTG GTCTACCTGG CGTGCATCCT GGCCATCGGC ATCCCGCTGC TGATGACCGA GGTGATGATC GGCCGCCGCG GTCGTGCCAA CCCGGAAGGC GCCTTCGCCG CGCTGGCCAG GGAAGCACGG GCCAGTCGGC ACTGGCGCTG GCTGGGTACG CTGGTGGTGC TGACCGGCTT TCTCATCCTC AGTTTCTATG CGGTGATCGC CGGTTGGGCC GTGGCCTATA CACCCACGGC CATGACCGGT GGCTTCGCCG GGCTGAACGG GGAGAGCAGC GGTGCGCTGT TCGGCGCCAT GCTGGCCGAC CCCTGGAAGC TGGCGGGCTA CGGCACTCTA GTACTGGTAC TGACCCTCGG TATCGTCGCC TTCGGCGTGC GCGGCGGCCT GGAGCGCTCG CTGCGTTTCC TCATGCCGGG GCTGTTCATC CTGCTGCTGG TGCTGGTGGG CTATGCCGCC ACCACCGGGC ATTTCATGCA GGCGGTGCAC TTTCTCTTCG ACGCCGACTT CAGCAAGCTC AGCGCCGCGG GCGTGCTGGC CGCGCTGGGG CATGCCTTCT TCACCCTGAG CCTGGCCAGC GGCGCGATGA TGGCCTACGG CTCCTACCTG CCGGCCGGCA CCTCGATCGC CAAGACCGCG CTGATGGTCG CCCTGGCCGA TACCGGCGTG GCGCTGCTGG CCGGTCTGGC GATCTTCCCG CTGGTGTTCG CCAACGGCCT GGAGCCGGGC GCAGGGCCGG GGCTGATCTT CGTCACCCTG CCGATCGCCT TCGGCCAGAT GCCCCTGGGC CAACTGGTGG GCGGGCTGTT CTTCATCATG CTGGCGATCG CCGCGCTGAC TTCGGCGATT TCCCTGAGCG AGCCGACCAT CGCCTGGCTG ACCGAGAAGT TCGGCATCGG CCGTTTCAAG GCGGTAGCGC TCAGCGGTAT CGCCCTGTGG CTGCTGAGCC TGGGCACGGT GCTGTCGTTC AATGCCTGGA GCGAGGTGAC CCTGCTGGGC AAGACCTTCT TCGACAGCCT GGATTTCCTC ACCACCAACC TGCTGATGCC GCTGGGCGGC CTGGCCACCG TGCTGTTCGC CGGCTGGGCG CTGAGCCGCA AGACCGTGCA GCAGTCCATC GGCATCGACC AGCCGCAGCT GTTCTCGCTG TGGTGGCAGG TGCTGCGCGT GATCACCCCG CTGGGCATCC TGGTGGTGTT CCTGCACAGC CTCGGGTTGT TCTGA
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Protein sequence | MSQDSIATGT FAGASSSAGR GLWSSRWVFF LAATGSAVGL GNIWKFPYIT GQNGGGAFVL VYLACILAIG IPLLMTEVMI GRRGRANPEG AFAALAREAR ASRHWRWLGT LVVLTGFLIL SFYAVIAGWA VAYTPTAMTG GFAGLNGESS GALFGAMLAD PWKLAGYGTL VLVLTLGIVA FGVRGGLERS LRFLMPGLFI LLLVLVGYAA TTGHFMQAVH FLFDADFSKL SAAGVLAALG HAFFTLSLAS GAMMAYGSYL PAGTSIAKTA LMVALADTGV ALLAGLAIFP LVFANGLEPG AGPGLIFVTL PIAFGQMPLG QLVGGLFFIM LAIAALTSAI SLSEPTIAWL TEKFGIGRFK AVALSGIALW LLSLGTVLSF NAWSEVTLLG KTFFDSLDFL TTNLLMPLGG LATVLFAGWA LSRKTVQQSI GIDQPQLFSL WWQVLRVITP LGILVVFLHS LGLF
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