Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2865 |
Symbol | |
ID | 5107780 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3145791 |
End bp | 3146702 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640504115 |
Product | periplasmic binding protein |
Protein accession | YP_001188352 |
Protein GI | 146307887 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00082186 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.0250097 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCTTG TCTGTTGCCT GCTGCTGGTC TGTCTGGCGC AGGGCGCCTG GGCGATCGAT GCACAACTGG TGGCCCGGCA GTCGGCCGGC GCTGGAGAGG CGCCGCAGCG GATCGTCAGC CTCGATGAGC TGAGTACCGA GCTGCTGGTG TCGCTGGGGA TCGAGCCGGT CGGCGTGGCC AACCTGGCCA GCTATCGCCG TTACATCGGT ATCGGCAACG ACCTGCTCGA GCGCAGTGTC GCATTGGGCA GCGCGCAACA ACCCAATCTG GAGGCCATTG CCCGGCTCAA GCCGGACTTG ATCGTGGGTG TGGCCTACCT GCACCTGCCG TTGTTCGAGC GTCTCGATGG CCTGGCACCG ACCCTCATCT ATCAGGTTTC GCTGGCATCG GCAGGCTATG ACGGCGTGGC CATCGGCGAG GCCATGCTGG CGCATCTTGG GCGCCTGACT GGGCGCGAGG CGCAGGCCGC TGCTGTCATC CGCGAAGGCC AGCAGGCGCT GGCTGCCGCA CGTCAATCCG TTCGTGAGCG AGATCTGCAG GGTGAGCCGG TTGCCGTGCT CTATCCGCTG GTGCAGCAGG GCAGTTTCAT CGCCCTCAAC CAGCAGACGC TGATCGGCAG CCTGATGAAC CGCCTGGAGG TACGCTCGCC CTGGACGCTG CGCTCCGCCC ACAGCCTGCA CCGGCGCATC GATATGCGCA GCTTCGCCAG CGAGCCGGGA CTGCGCGTGC TGTTCATCGG TGGGCAGGAG CGGGCGCCGT TCTTCGCCAG TCCCCTGTGG AAGGCGCTGC CAGTCGCCCA GCAGCAGCGT TACGCCTTTC TTCCCACGCC GTACTGGACC TTTGGTGGCC CGCGTTCGAC GGCTGCTATC GCGACCCAGG TGCGCGAGGC GATCGAGGCG ATGAATCGTT GA
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Protein sequence | MRLVCCLLLV CLAQGAWAID AQLVARQSAG AGEAPQRIVS LDELSTELLV SLGIEPVGVA NLASYRRYIG IGNDLLERSV ALGSAQQPNL EAIARLKPDL IVGVAYLHLP LFERLDGLAP TLIYQVSLAS AGYDGVAIGE AMLAHLGRLT GREAQAAAVI REGQQALAAA RQSVRERDLQ GEPVAVLYPL VQQGSFIALN QQTLIGSLMN RLEVRSPWTL RSAHSLHRRI DMRSFASEPG LRVLFIGGQE RAPFFASPLW KALPVAQQQR YAFLPTPYWT FGGPRSTAAI ATQVREAIEA MNR
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