Gene Pmen_2865 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2865 
Symbol 
ID5107780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3145791 
End bp3146702 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content66% 
IMG OID640504115 
Productperiplasmic binding protein 
Protein accessionYP_001188352 
Protein GI146307887 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00082186 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.0250097 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCTTG TCTGTTGCCT GCTGCTGGTC TGTCTGGCGC AGGGCGCCTG GGCGATCGAT 
GCACAACTGG TGGCCCGGCA GTCGGCCGGC GCTGGAGAGG CGCCGCAGCG GATCGTCAGC
CTCGATGAGC TGAGTACCGA GCTGCTGGTG TCGCTGGGGA TCGAGCCGGT CGGCGTGGCC
AACCTGGCCA GCTATCGCCG TTACATCGGT ATCGGCAACG ACCTGCTCGA GCGCAGTGTC
GCATTGGGCA GCGCGCAACA ACCCAATCTG GAGGCCATTG CCCGGCTCAA GCCGGACTTG
ATCGTGGGTG TGGCCTACCT GCACCTGCCG TTGTTCGAGC GTCTCGATGG CCTGGCACCG
ACCCTCATCT ATCAGGTTTC GCTGGCATCG GCAGGCTATG ACGGCGTGGC CATCGGCGAG
GCCATGCTGG CGCATCTTGG GCGCCTGACT GGGCGCGAGG CGCAGGCCGC TGCTGTCATC
CGCGAAGGCC AGCAGGCGCT GGCTGCCGCA CGTCAATCCG TTCGTGAGCG AGATCTGCAG
GGTGAGCCGG TTGCCGTGCT CTATCCGCTG GTGCAGCAGG GCAGTTTCAT CGCCCTCAAC
CAGCAGACGC TGATCGGCAG CCTGATGAAC CGCCTGGAGG TACGCTCGCC CTGGACGCTG
CGCTCCGCCC ACAGCCTGCA CCGGCGCATC GATATGCGCA GCTTCGCCAG CGAGCCGGGA
CTGCGCGTGC TGTTCATCGG TGGGCAGGAG CGGGCGCCGT TCTTCGCCAG TCCCCTGTGG
AAGGCGCTGC CAGTCGCCCA GCAGCAGCGT TACGCCTTTC TTCCCACGCC GTACTGGACC
TTTGGTGGCC CGCGTTCGAC GGCTGCTATC GCGACCCAGG TGCGCGAGGC GATCGAGGCG
ATGAATCGTT GA
 
Protein sequence
MRLVCCLLLV CLAQGAWAID AQLVARQSAG AGEAPQRIVS LDELSTELLV SLGIEPVGVA 
NLASYRRYIG IGNDLLERSV ALGSAQQPNL EAIARLKPDL IVGVAYLHLP LFERLDGLAP
TLIYQVSLAS AGYDGVAIGE AMLAHLGRLT GREAQAAAVI REGQQALAAA RQSVRERDLQ
GEPVAVLYPL VQQGSFIALN QQTLIGSLMN RLEVRSPWTL RSAHSLHRRI DMRSFASEPG
LRVLFIGGQE RAPFFASPLW KALPVAQQQR YAFLPTPYWT FGGPRSTAAI ATQVREAIEA
MNR