| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2810 |
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| Symbol | fliR |
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| ID | 5107606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3089595 |
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| End bp | 3090371 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640504060 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_001188297 |
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| Protein GI | 146307832 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.47893 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.0490399 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGGAAC TGAGCAACGA ACAAATCAGC GGCTGGGTCG GCCAGTTCCT GCTGCCGTTG
TTCCGCATCG CGGCGATGCT GATGGTCATG CCGATCATCG GGACGCAACT GGTGCCGAAT
CGGGTTCGCC TGTACCTGGC GCTGGCGATC AGCGTGGTGC TGGTGCCGAC CCTGCCGCCG
ATGCCGCAGG TCGACGCGCT GAGCCTGCGC AGCCTGTTGC TGATCCTGGA ACAGGTGCTG
ATCGGCGCCA TGTTCGGCTT CATCCTGCAG TTGTTCTTTC ATCTGTTCGC CGTGGCGGGG
CAGATCATTG CCATGCAGAT GGGCCTGGGC TTCGCCTCCA TGGTCGATCC TACCAACGGC
GTTTCCGTGC CGGTGCTCGG CCAGTTCATG CTGATGCTGG TGACGCTGCT GTTTTTGGCG
ATCAACGGCC ATCTGGTGGT TCTGGAGGTG CTTGCCGAAA GCTTCGTCAG CCTGCCGCCA
GGGCAGGGCC TGATGATCGG TCACTACTGG GAGCTGGCCG GCAAGCTCGG CTGGGTGATC
GGCGCCGGTT TGCTGTTGAC CCTACCCATG GTCACCGCGC TACTGGTGAT CAACCTGGCG
TTCGGCGTGA TGACCCGTGC GGCGCCGCAG CTGAACATCT TCTCCATCGG TTTCCCGCTG
ACCCTGGCCA TGGGCCTGGT GATCTTCTGG ATCGGCCTGT CCGACTTCGG CAGCCTGTTC
CAGGCCCTGG CCAGCGAGGC CTTGCAGCAG CTGGGCGAAT TCGCCCTGAC GCGATGA
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| Protein sequence | MLELSNEQIS GWVGQFLLPL FRIAAMLMVM PIIGTQLVPN RVRLYLALAI SVVLVPTLPP
MPQVDALSLR SLLLILEQVL IGAMFGFILQ LFFHLFAVAG QIIAMQMGLG FASMVDPTNG
VSVPVLGQFM LMLVTLLFLA INGHLVVLEV LAESFVSLPP GQGLMIGHYW ELAGKLGWVI
GAGLLLTLPM VTALLVINLA FGVMTRAAPQ LNIFSIGFPL TLAMGLVIFW IGLSDFGSLF
QALASEALQQ LGEFALTR
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