Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2725 |
Symbol | |
ID | 5107876 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2990402 |
End bp | 2992555 |
Gene Length | 2154 bp |
Protein Length | 717 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640503969 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001188212 |
Protein GI | 146307747 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.172089 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAGAT CCACTGACCT GCCCCCACGC CTGCCGCACA TCCCGGCCAA GGATCCTGCC GAGTTCGAGC AGACCTGGCG TGATGCGCCG CGACTGCTGG CGGCGCTCAA CGGGGCCCGA CTGGGAGCCT GGTACTGGGA CATCGACAGT GGCCAGGTCA GCTGGTCGCG CGGGGCCCAG GCCCTGTTCG GCCTGGACCC CGAACGCCCG CTGAGCAGCA GCGTCGAGTA CATCGAACTG ATCCCCGACG AAGAACGGGG TGCGGTGCTG CGCCAGTTCA ACGCCATTCT CGCCGGCAAC GACGAAGGCC GCGCGCTGCG CCACCGCATC CGCTGGCCGG ACGGCAGCCT GCACTGGCTG GAGATCAGCG GCAGCCTGCA GCGCGAGGCA GACGGCCGGC GACGCATGTT CGGCGTGATT CGCGACATCA CCCAGCAGCA GGTTCGCGCC GATGCCTTGC GCGCCTCCGA GGAGAAGTTC GCCAAGGCAT TCCACTCCAG CCCGGACGCC ATCACCATCA CCGAGCGCGA CACCGCGCGC TACATAGAGG TCAACGAGGG CTTCACCCGC CTCACCGGCT ACAGCTCGGC CGAAGTGATC GGGCGCACGG CCTTCGAGCT CAACATCTGG GCCTTTCCCG AGGAGCGCGC AGTGATGCTC GATCACCTGG CCAAGAACGG CCAGGTGCTG CACATGGAAA TGCACGGGCA ACACCGCAAT GGCGATGTGC GCCTGGTGGA GGTTTCGGTT CAGCCGCTGG ATCTCAATGG CAGCTCCTGC CTGCTGCTCA CCGCCCGCGA CATCAGCGAG CTGAAACAGG CGCAGGCTCA GGTCCAGCAC CTGGCCTATC ACGATGCGCT GACCAACCTG CCCAACCGCG CCATGCTGAT CAATCGCCTG ACCCAGCAGA TCGCGCTACT CAAGCGTCAC GACATGCGCA GCGCCCTGCT GTTCATCGAC CTGGATCACT TCAAACACAT CAACGACTCG CTCGGCCACC CGGTCGGCGA TGCGGTACTG CGCCTGGTAA CCGCCCGCCT GGAAGCCACC GTGCGCCTCG AAGACACCGT GGCGCGCCTG GGGGGCGACG AGTTCGTGGT GCTGCTCTGC GGCCTGCAGG GCAAGCGCTC GGAAGTCACC CGTCAGGTCC GCCAGGTCGC CGAGAAGCTG CGCCACTTGC TGGCCGAGCC CATGCTGCTG GACGGGCACC ATCTGCAGGT CACACCGAGC ATCGGCATCG CCCTGATTCC CGACCACGGC GAAACCCCCG CCGACCTGCT CAAGCGCGCC GACATCGCCC TATATCGGGC CAAGGATTCG GGCCGCAATG CCATTCAGCT GTTTCGCAGC ACCATGCAGG ACGCCGTCAG CGCCCGCCTG CGTCTGGAGA ACGACCTGCG CCTGGCACTG GCCCGCGGCG AGTTCGAACT GCATTTCCAG CCCCAGGTCG ATGCCCGCGA CGGCCAGGTG GTCGGCGCCG AAGCCCTGCT GCGCTGGCAA CACCCTCAGC ACGGTCCGCA GTCGCCGGCG CAGTTCATTC AGGTGTTGGA AGAAAGCGGG CTGATCATCG AGGTCGGTGG CTGGGTGCTG ACCGAAGCCT GTCACCTCTG CGCCCGCCTG CTGGCCGACA AGCTGATCGA CGCCGAGCGC TTCAGCCTGT GCGTCAACAT CAGCCCCAGG CAGTTCCGCC AGCACGATTT CGTCGAGCGC GTGGCCGGCT GCCTGCGTAC CAGCCAGCTG CCCCACGCCA TGCTCAAACT GGAAATCACC GAAGGCATCG TGATCCAGAA CATCGACGAC ACCGTCGGCA AGATGCTGCG CCTGAAAAAA CACGGGGTCA GCTTCGCCAT GGACGATTTC GGTACCGGCT ACAGCTCGCT GACCTACCTC AAGCGCCTGC CGGTGGACAT GTTGAAAATC GATCAGTCGT TCGTGCGCGA TGCCACCAGC GACCCCAACG ACGCCGGCAT CATTCGTGCC ATCGTCGCCA TGGCGCGCAG CCTGGGTCTG GGGCTGATCG CCGAGGGCGT CGAGCAGCAG GAACAGCTGG ACTTCCTGCA AGCGCAGGAC TGCCACCTGT ATCAGGGCTA CCTGTTCAGC AAGCCAGTGC CGGAGGACGC CTTCCGCGCC CTGCTCGGCC AACACCGCAG CTGA
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Protein sequence | MARSTDLPPR LPHIPAKDPA EFEQTWRDAP RLLAALNGAR LGAWYWDIDS GQVSWSRGAQ ALFGLDPERP LSSSVEYIEL IPDEERGAVL RQFNAILAGN DEGRALRHRI RWPDGSLHWL EISGSLQREA DGRRRMFGVI RDITQQQVRA DALRASEEKF AKAFHSSPDA ITITERDTAR YIEVNEGFTR LTGYSSAEVI GRTAFELNIW AFPEERAVML DHLAKNGQVL HMEMHGQHRN GDVRLVEVSV QPLDLNGSSC LLLTARDISE LKQAQAQVQH LAYHDALTNL PNRAMLINRL TQQIALLKRH DMRSALLFID LDHFKHINDS LGHPVGDAVL RLVTARLEAT VRLEDTVARL GGDEFVVLLC GLQGKRSEVT RQVRQVAEKL RHLLAEPMLL DGHHLQVTPS IGIALIPDHG ETPADLLKRA DIALYRAKDS GRNAIQLFRS TMQDAVSARL RLENDLRLAL ARGEFELHFQ PQVDARDGQV VGAEALLRWQ HPQHGPQSPA QFIQVLEESG LIIEVGGWVL TEACHLCARL LADKLIDAER FSLCVNISPR QFRQHDFVER VAGCLRTSQL PHAMLKLEIT EGIVIQNIDD TVGKMLRLKK HGVSFAMDDF GTGYSSLTYL KRLPVDMLKI DQSFVRDATS DPNDAGIIRA IVAMARSLGL GLIAEGVEQQ EQLDFLQAQD CHLYQGYLFS KPVPEDAFRA LLGQHRS
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