| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2723 |
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| Symbol | |
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| ID | 5107874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2987715 |
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| End bp | 2989142 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640503967 |
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| Product | isopropylmalate isomerase large subunit |
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| Protein accession | YP_001188210 |
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| Protein GI | 146307745 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
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| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00243563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.0720472 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGGCA AGACGCTCTA CGACAAGCTC TGGGAAATGC ACGAAGTGAA ACGTCGCGAC
GACGGTTCCT CGTTGATCTA CATCGACCGT CACATCCTCC ACGAAGTGAC CTCGCCGCAG
GCCTTCGAAG GCCTGCGTCT GGCCGGGCGC AAGCCGTGGC GCATCGATGC CAACATCGCC
ACCCCGGACC ACAACGTGCC GACCACCAAG GCCGAGCGCC AGGGCGGCCT CGAAGCCATC
GCCGACGAAG TCTCGCGCAT CCAGGTGCAG ACCCTGGACG AGAACTGCGA TGACTTCGGC
ATCCTCGAAT TCAAGATGAA CGACGTGCGT CAGGGCATCG TGCACGTGGT CGGGCCGGAG
CAGGGCGCCA CGCTGCCGGG CATGACCGTG GTTTGCGGCG ACTCGCACAC CTCCACCCAT
GGCGCCTTCG GCGCGCTGGC CCATGGCATC GGCACCTCCG AGGTCGAGCA TGTGCTCGCT
ACCCAGTGCC TGGTGGCCAA GAAGATGAAG AACATGCAGG TACGCGTCGA AGGCAAATTG
CCGTTCGGCG TCACCGCCAA GGACATCGTG CTGGCCGTGA TCGGCAAGAT CGGCACCGCC
GGCGGCAACG GCCATGCCCT GGAATTCGCC GGCAGCGCGA TTCGCGACCT TTCTCTGGAA
GGGCGCATGA CCATCTGCAA CATGTCCATC GAGGCTGGCG CCCGTGTGGG CCTGGTGGCG
GTGGACGAAA AGACCATCGC CTACGTCAAG GATCGTCCGT TCGCGCCCAA GGGCAGCGAC
TGGGACAAGG CCGTGACGCA GTGGCAGAAC CTGGTGTCCG ACGCCGATGC AGTGTTCGAC
ACCGTGGTGG AACTCAAGGC CGAAGACATC AAACCGCAGG TCAGCTGGGG CACCTCGCCG
GAGATGGTCC TGGCCGTCGA CCAGAACGTG CCGGATCCGG CCGTTGAAAC TGACCCGGTG
AAGAAGGATT CGATCACTCG TGCACTCAAG TACATGGGCC TGAGCGCCAA CCAGCCGATC
ACCGATATCC AGCTCGATCG CGTGTTCATT GGTTCCTGCA CCAACTCGCG CATCGAAGAC
CTGCGCGCCG CCGCCGAGGT GGCCAAGGGT CGCAAGGTCG CCAGCACCGT CAAGCAGGCG
CTGGTGGTGC CGGGCTCCGG CCTGGTCAAG GCGCAGGCCG AAGCGGAAGG GCTGGACAAG
ATCTTTATCG AGGCCGGTTT CGAATGGCGT GAGCCGGGCT GCTCCATGTG CCTGGCGATG
AACCCGGACA AGCTGGGCAG CGGCGAGCAT TGCGCGTCCA CCTCCAACCG CAACTTCGAA
GGGCGTCAGG GCGCCGGTGG CCGTACCCAC CTGGTGAGCC CGGCCATGGC TGCCGCTGCG
GCGGTGACCG GCCGCTTCAT CGACGTTCGC GAATTGATCC AGGCCTGA
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| Protein sequence | MTGKTLYDKL WEMHEVKRRD DGSSLIYIDR HILHEVTSPQ AFEGLRLAGR KPWRIDANIA
TPDHNVPTTK AERQGGLEAI ADEVSRIQVQ TLDENCDDFG ILEFKMNDVR QGIVHVVGPE
QGATLPGMTV VCGDSHTSTH GAFGALAHGI GTSEVEHVLA TQCLVAKKMK NMQVRVEGKL
PFGVTAKDIV LAVIGKIGTA GGNGHALEFA GSAIRDLSLE GRMTICNMSI EAGARVGLVA
VDEKTIAYVK DRPFAPKGSD WDKAVTQWQN LVSDADAVFD TVVELKAEDI KPQVSWGTSP
EMVLAVDQNV PDPAVETDPV KKDSITRALK YMGLSANQPI TDIQLDRVFI GSCTNSRIED
LRAAAEVAKG RKVASTVKQA LVVPGSGLVK AQAEAEGLDK IFIEAGFEWR EPGCSMCLAM
NPDKLGSGEH CASTSNRNFE GRQGAGGRTH LVSPAMAAAA AVTGRFIDVR ELIQA
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