Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2721 |
Symbol | |
ID | 5107872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2985886 |
End bp | 2986968 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640503965 |
Product | 3-isopropylmalate dehydrogenase |
Protein accession | YP_001188208 |
Protein GI | 146307743 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0190941 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.0566777 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAAC AGATTCTGGT TCTCCCTGGC GACGGTATCG GCCCGGAAAT CATGGCCGAA GCGGTCAAGG TGCTGAACCT GGCCAACGAC AAGTACGCCC TGGGTTTCGA ACTGAGCTTC GATGACCTGG GCGGCGCCGC CATCGACCGC TACGGCGTGC CGCTGGCCGA CGAGACCCTG GCGCGCGCCA AGGCCGCCGA TGCCGTGCTG CTCGGCGCCG TTGGCGGGCC GAAGTGGGAC ACCATCGATC CGGCCATCCG TCCGGAGCGC GGCCTGCTGA AGATCCGTTC GCAACTGGGC CTGTTCGGCA ACCTGCGTCC GGCCATCCTC TATCCGCAAC TGGCCGAGGC CTCCAGCCTC AAGCCTGAGG TTGTGGCGGG GTTGGATATC CTCATCGTGC GTGAGCTGAC CGGCGGCATC TACTTCGGCC AGCCGCGCGA GAGCAAGGTG CTGGAAAACG GCGAGCGCAT GGCCTACGAC ACCCTGCCGT ACAGCGAGAG CGAAATCCGT CGCATTGCCA AGGTCGGTTT CGACATGGCC CGCGTGCGCG GCAAGAAGCT GTGCTCGGTG GACAAGGCCA ACGTCCTGGC CTCCAGCCAG CTGTGGCGCA CGGTGGTCGA GGAAGCGGCC AAGGACTATC CGGACGTCGA GCTGAGCCAC ATGTACGTCG ACAACGCTGC CATGCAACTG GTGCGCGCAC CCAAGCAGTT CGACGTGATC GTCACCGACA ACATGTTTGG TGACATTTTG TCCGACGAGG CTTCGATGCT CACCGGCTCC ATCGGCATGC TGCCGTCGGC TTCCCTGGAT GCCAACAACA AGGGCATGTA CGAGCCGTGC CACGGCTCCG CGCCGGATAT CGCCGGCAAG GGCATCGCCA ACCCGCTGGC CACCATTCTC TCGGTGTCCA TGATGCTGCG TTACAGCTTC GGCCAGGTGG CCGCGGCCGA TGCCATCGAA AAAGCGGTGA GCCTGGTGCT GGATCGGGGC CTGCGTACCG GCGACATCTG GTCCGAGGGC AAGACCAAGG TCGGTACCGC TGCGATGGGT GATGCAGTAG TCGAAGCGCT GCGTAGTCTG TAA
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Protein sequence | MSKQILVLPG DGIGPEIMAE AVKVLNLAND KYALGFELSF DDLGGAAIDR YGVPLADETL ARAKAADAVL LGAVGGPKWD TIDPAIRPER GLLKIRSQLG LFGNLRPAIL YPQLAEASSL KPEVVAGLDI LIVRELTGGI YFGQPRESKV LENGERMAYD TLPYSESEIR RIAKVGFDMA RVRGKKLCSV DKANVLASSQ LWRTVVEEAA KDYPDVELSH MYVDNAAMQL VRAPKQFDVI VTDNMFGDIL SDEASMLTGS IGMLPSASLD ANNKGMYEPC HGSAPDIAGK GIANPLATIL SVSMMLRYSF GQVAAADAIE KAVSLVLDRG LRTGDIWSEG KTKVGTAAMG DAVVEALRSL
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