| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2655 |
|---|
| Symbol | |
|---|
| ID | 5107964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2912466 |
|---|
| End bp | 2912960 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640503899 |
|---|
| Product | blue (type1) copper domain-containing protein |
|---|
| Protein accession | YP_001188142 |
|---|
| Protein GI | 146307677 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4454] Uncharacterized copper-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.366193 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAG CACAGTTACT GGTTCTGACC CTGATCGGGC TGCTCGGCAG CCCGGCAGCG
CTGGCCCACA GCGAGACGCA CGAGCGCCAT CAGGCCGCCG CAACGATCAG GGAGCAGAAA
CCCTGGGGCA TCGCCGGCGA TGCCGGTGAG GTCGACCGCA CCATCGAGAT CCGCATGACC
GATCAGATGC GTTTCACTCC GGATCGGCTG CAGGTCCGGC AGGGCGAGAC CATTCGTTTC
GTCCATCACA ACGACGGCAA GATCCTCCAC GAGTTCGTCA TCGGTACCCG CGAAACCCTG
GATGAACATG CCGAGGCGAT GCTGCGTTTT CCCGGCATGG AACACGACGA GCCCTACATG
GCCCACGTTG CGCCGGGGCA GAGCGGCGAG ATGATCTGGA CCTTCAACCG CGCCGGCGAA
TTCGATTTCG CCTGCCTGAT CGCCGGCCAC TACCAGGCCG GCATGGTTGG CACCATCCAG
GTGCTGGCCG ACTGA
|
|---|
| Protein sequence | MKTAQLLVLT LIGLLGSPAA LAHSETHERH QAAATIREQK PWGIAGDAGE VDRTIEIRMT
DQMRFTPDRL QVRQGETIRF VHHNDGKILH EFVIGTRETL DEHAEAMLRF PGMEHDEPYM
AHVAPGQSGE MIWTFNRAGE FDFACLIAGH YQAGMVGTIQ VLAD
|
|---|
| |