| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2618 |
|---|
| Symbol | |
|---|
| ID | 5107928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2880122 |
|---|
| End bp | 2880958 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640503862 |
|---|
| Product | metal-dependent hydrolase-like protein |
|---|
| Protein accession | YP_001188106 |
|---|
| Protein GI | 146307641 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3687] Predicted metal-dependent hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00276728 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.902339 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCAA GCGCTACCCT GCCCCAGCCG AAATCCAGCT TTCCGGTTCG CCGCATGGAC
TTCAGCTTCG CCGAAACGCC GAAATACTGG TTCTTCGACG ATCCCTTCAT GAGCCACTTC
ATGAACAACC TGTCGTCGCT GTTTCCCTAT GGCGAAAAAT TCTTCGTCGA CAGCGTGCGG
GCGGTGCGCG ACCAGGTCAG CGAGCCGCAG CTGAAGAAGG ACATCAGCGC CTTTATCGGC
CAGGAGGCCA TGCACTCCAA GGAGCATGCG GCCTATAACG ACTATGCCAA CGAGCACAAT
ATCGACCTGG AGCGCCTGGA GCTACGCATC AAGGTACTAC TCGAATGGAC GACCCGCTTC
AGCACCAAGA AACAGCGCCT GGCCGCCACC TGCGCGCTGG AGCACTTCAC CGCGACCATG
GCCGAGCAAC TGCTCAAGCG CGAAGACCTC ACCACGCAGA TGAACGATCC GAAGCTGTAC
CAGCTGTGGA TGTGGCACGC CATCGAGGAG AACGAGCACA AGGCCGTGTG CTACGACGTG
TACCAGAAGG TCTATGGCGG CTACTTCACC CGTACGCTGG TGATGATGCT GACCACCGTG
ATGTTCCTCG GTGTGATCGG CTGGTTCCAG ATTCACCTGC TGCGCAAGGA CGGTCAGCTG
TTCAACTGGC GCAGCTGGGG CTTCGGTTTG AAGAAACTGT TCGGCCCGCG CAACGGCTTC
TTCACCAAGC TGATCGGCCC CTACCTGGAC TACTACCGCC CCGGCTTCCA CCCCAAGGAT
CACGATACCG AGACGCTGGA GAATCGCTGG CGCGAGCGCC TCGGCTTCGG CAACTGA
|
|---|
| Protein sequence | MNASATLPQP KSSFPVRRMD FSFAETPKYW FFDDPFMSHF MNNLSSLFPY GEKFFVDSVR
AVRDQVSEPQ LKKDISAFIG QEAMHSKEHA AYNDYANEHN IDLERLELRI KVLLEWTTRF
STKKQRLAAT CALEHFTATM AEQLLKREDL TTQMNDPKLY QLWMWHAIEE NEHKAVCYDV
YQKVYGGYFT RTLVMMLTTV MFLGVIGWFQ IHLLRKDGQL FNWRSWGFGL KKLFGPRNGF
FTKLIGPYLD YYRPGFHPKD HDTETLENRW RERLGFGN
|
|---|
| |