| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2613 |
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| Symbol | |
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| ID | 5107923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2875652 |
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| End bp | 2877034 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640503857 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | YP_001188101 |
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| Protein GI | 146307636 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0494061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.675142 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGATG CCATCCAGTG GGATGCCGAC CTGATCCGCC GTTACGATCT CGCCGGCCCG
CGCTACACCT CCTATCCGAC CGCCGTACAG TTTCACGACG ACATCGGCCC GTTCGACCTG
CTGCACGCCC TGCGTGACAG CCGCAAGGCC CGGCGCCCGC TGTCGCTGTA CGTGCACGTG
CCGTTCTGCG CGCACATCTG CTACTACTGC GCCTGCAACA AGGTGATCAC CAAGGACCGC
GGTCGCGCCC TGCCCTATCT GGAAAAGCTC GAGCGGGAAA TCGAGATCGT CAGCCGCTAC
GTCGACAAGG ACCAGCCGAT CGAGCAGCTG CACTTCGGCG GCGGCACCCC GACCTTCCTC
AGCCACGACG AATTGCGTCG GCTGATGCTG CACCTGCGTC AGCATTTCAA TCTGCTGGAT
GACGATTCCG GCGACTACAG CATCGAGATC GACCCACGCG AGGCCGACTG GTCGACCATG
GGCCTGCTGC GCGAGCTGGG TTTCAACCGC GTCAGCCTCG GCGTACAGGA CCTCGACCCC
GAAGTGCAAC GCGCGGTCAA TCGCCTGCAG ACCTTGGAAG AAACCCGCGC CATCGTCGAG
GCGGCGCGCA CCCTGCAGTT CCGCTCGGTG AACATCGACC TGATCTACGG CCTGCCCAAG
CAGACGCCGG AACGCTTCGC GCGGACCGTG GCCGAAGTGA TCGCCCTGCA GCCGGACCGC
CTGTCGCTGT TCAACTACGC GCACCTGCCG GAGCGCTTCA TGCCGCAGCG GCGCATCAAC
AACGATGACC TGCCCAGCCC GGGCGACAAG CTGGTCATGC TGCAAGCCAG CATCGAACAG
CTGACCCGCG CCGGCTACCG CTACATCGGC ATGGACCACT TCGCCCTGCC CGACGACGAG
CTGGCCGTGG CTCAGGAGGA AGGTACCCTG CAGCGCAATT TCCAGGGTTA CACCACCCAT
GGCCACTGCG ACCTGATCGG CCTGGGGGTG TCGGCCATCA GCCAGATCGG CGACCTGTAC
AGCCAGAACG ACAGCGATAT CACCAGCTAT CAGCAGACCC TGGGCAACGG CCAGCTGGCA
ACGCGCCGCG GCCTGCACTG CAACGCCGAC GATCGCCTGC GCCGTGCGGT GATCCAGCAA
CTGATCTGCC ATTTCGAACT GCGCTTCAGC GAGATCGAGC AGGCTCACGG CGTGAACTTT
CACGAGTACT TCGCCAGTCT CTGGCCGCAG CTGGAGCAGC TGCATCGCGA CGGACTGATC
GAACTGACTG CGCAGGGTAT CGAGGTGCGC CCGGCCGGAC GGCTGCTGGT GCGTTCGCTG
TGCATGCTGT TCGACCGTTA TCTCAACGAC CAGGTGCGCC AGCGCTTTTC ACGGGTGATC
TGA
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| Protein sequence | MLDAIQWDAD LIRRYDLAGP RYTSYPTAVQ FHDDIGPFDL LHALRDSRKA RRPLSLYVHV
PFCAHICYYC ACNKVITKDR GRALPYLEKL EREIEIVSRY VDKDQPIEQL HFGGGTPTFL
SHDELRRLML HLRQHFNLLD DDSGDYSIEI DPREADWSTM GLLRELGFNR VSLGVQDLDP
EVQRAVNRLQ TLEETRAIVE AARTLQFRSV NIDLIYGLPK QTPERFARTV AEVIALQPDR
LSLFNYAHLP ERFMPQRRIN NDDLPSPGDK LVMLQASIEQ LTRAGYRYIG MDHFALPDDE
LAVAQEEGTL QRNFQGYTTH GHCDLIGLGV SAISQIGDLY SQNDSDITSY QQTLGNGQLA
TRRGLHCNAD DRLRRAVIQQ LICHFELRFS EIEQAHGVNF HEYFASLWPQ LEQLHRDGLI
ELTAQGIEVR PAGRLLVRSL CMLFDRYLND QVRQRFSRVI
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