| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2583 |
|---|
| Symbol | |
|---|
| ID | 5108050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2848525 |
|---|
| End bp | 2849754 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640503827 |
|---|
| Product | aminotransferase |
|---|
| Protein accession | YP_001188071 |
|---|
| Protein GI | 146307606 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.117889 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.0369649 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAGA ACGCCAAGCG CCGCTTTGCG CGCATCGATC GTCTCCCCCC CTACGTCTTC
AACATCACCG CCGAACTGAA GATGGCCGCG CGCCGTCGCG GCGAGGACAT CATCGACTTC
TCCATGGGCA ATCCCGACGG TGCGACCCCG CCGCACATCG TCGAGAAGCT CGTGCAGGTC
GCCCAGCGTG AAGACACCCA CGGATACTCC ACCTCCCGCG GCATCCCGCG CCTGCGCCGC
GCCATCTCGC GCTGGTACAA GGACCGCTAC GACGTGGAGA TCGATCCGGA AAGCGAAGCC
ATCGTCACCA TCGGCTCCAA GGAAGGCCTG GCACACCTGA TGCTGGCCAC CCTGGACCAT
GGCGACACCG TGCTGGTACC CAACCCCAGC TATCCGATCC ATATCTACGG TGCGGTGATC
GCCGGCGCCC AGGTGCGCTC CGTGCCGCTG GTGCCGGGCG TGGATTTCTT CGCCGAACTG
GAGCGCGCCA TCCGCGAGTC GATTCCCAAG CCGAAGATGA TGATCCTCGG TTTCCCCTCC
AACCCCACCG CGCAGTGCGT GGAGCTGGAC TTCTTCGAGC GCGTGGTGAC CCTGGCCAAG
CAGTACGACG TACTGGTGGT GCACGACCTG GCCTACGCCG ACATCGTCTA CGACGGCTGG
AAGGCACCGT CGATCATGCA GGTGCCGGGC GCCAAGGACA TCGCGGTGGA GTTCTTCACC
CTGTCCAAGA GCTACAACAT GGCCGGCTGG CGCATCGGCT TCATGGTCGG TAATCCCGAG
CTGGTCAGCG CCCTGGCGCG CATCAAGAGC TACCACGACT ACGGCACCTT CACCCCACTG
CAGGTGGCGG CCATCGCGGC GCTGGAAGGT GATCAGCAGT GCGTGCGCGA TATCGCCGAG
CAGTACCGTC AGCGCCGCAA CCTGCTGGTC AAGGGCCTGC ACGAGATCGG CTGGATGGTG
GAAAAGCCCA AGGCCTCGAT GTACATCTGG GCCAAGATTC CCGAGGCCTA CGCCCATCTG
GGCTCGCTGG AGTTCGCCAA GAAGCTGCTG GCAGAAGCCA AGGTCTGCGT CTCGCCCGGG
CTGGGTTTCG GCGACTATGG CGACGACCAC GTGCGCTTCG CCCTGATCGA GAATCAGGAC
CGTACGCGCC AGGCGCTGCG CGGCATCAAG GCGATGTTCC GTGCCGACGG CTTGCTGCCG
GGCAAGCCGG CCAAGGCCGA GAGCGAGTAA
|
|---|
| Protein sequence | MAENAKRRFA RIDRLPPYVF NITAELKMAA RRRGEDIIDF SMGNPDGATP PHIVEKLVQV
AQREDTHGYS TSRGIPRLRR AISRWYKDRY DVEIDPESEA IVTIGSKEGL AHLMLATLDH
GDTVLVPNPS YPIHIYGAVI AGAQVRSVPL VPGVDFFAEL ERAIRESIPK PKMMILGFPS
NPTAQCVELD FFERVVTLAK QYDVLVVHDL AYADIVYDGW KAPSIMQVPG AKDIAVEFFT
LSKSYNMAGW RIGFMVGNPE LVSALARIKS YHDYGTFTPL QVAAIAALEG DQQCVRDIAE
QYRQRRNLLV KGLHEIGWMV EKPKASMYIW AKIPEAYAHL GSLEFAKKLL AEAKVCVSPG
LGFGDYGDDH VRFALIENQD RTRQALRGIK AMFRADGLLP GKPAKAESE
|
|---|
| |