Gene Pmen_2554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2554 
Symbol 
ID5108021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2816473 
End bp2817846 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content65% 
IMG OID640503798 
Productcitrate transporter 
Protein accessionYP_001188042 
Protein GI146307577 
COG category[E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism 
COG ID[COG2610] H+/gluconate symporter and related permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000334363 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.3683e-16 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTGGGTA ATCTGGGGCT GTTGCTGGGC TTGGCGCTGC TGATCTTCAT GGCGCTGCGT 
GGCGTGAACA TTTTCATAGC GGCGCTGCTG TGTTCGATTC TGGTGGCATT GAGCAATGGC
GTTGCAGTGC CCAAGGCGCT TCTGGAACAT TTTCCGTTCG GGCCGCTGGG GGCATTTACA
TTCGCCGGCA AGTTCTTCGT GCTGTTTCTC TGCGGCGCCA TCTTCGGCAA GGTCATGGCC
GCCAGCCAGG CGGCCAGCAG CATTGCCCAG GCGATCACGC GCGGCCTCGG CACCCAGCGC
ACGCTGTGGG TGGCGATGCT GGTCTGCGCG GTGCTGACCT ATGGCGGGGT GGTGGTGTTC
GTGGTGATCT TCACCATGTA TCCGCTGGGC ATCACCCTGA TGCGCGAGGC CAACCTGCCG
AAGCGCCTGT TCTGCGCCGC GACGGCGTTG GGCGCCGGCA CCTTCACCAT GACCGCGCTG
CCGGGCTCGC CCTCGATTCA CAACGTGATC GCTGCCAGCG CTCTGGGCAC CGATCTGTTC
GCCGGTGCCT GGATCGGTCT GTTCGCTTCG CTGGTGATGA TCGGCCTGGG CATGGCCTAT
CTGCAGCGCG AGTGGCGCCT GGCCCGCGAG CGTGGAGAGG GTTTCGAGGC CAATGTCCAG
GACGTGCGCA TGGAGCAGCT GGCCGGCACG CCGGGCAGCG GCCCGCACTG GGGCATGGCG
CTGGTGCCGA TCGTCGTGGT GCTGGGGATC ATTCTGTTGC CCCGCGTGAT CGCGCTGTCC
GGCATGGTGA TGCCGGGGCA GGGTGCGCTG GGCCAGCTGC TGGCGTTCAG CCAGGCACAG
CCGATCCTCT GGCCGAGTCT GGCGCTGGTC ATCGCCACGG GCGTGGCGGT GGTGATGTTC
CCGGCGCTAC GGCGCAACAC CATGGGCTTG CTCGGTCAGG GCGCCGATGA CGCCATCATG
CCGCTGCTCA ATACCGCGGC GGTGATCGGC TTCGGTGGGG TGGTGACACA GACCGCCGGC
TTCGCCCAGT TCGCGCAGTG GATACTGGCG GTCGAGCTGC CGCCGCTGCT GTCGGTGTTC
GCCTCGGTCA GCGTGGTGTC GGGTATCGTC GGTTCGTCCT CGGGCGGGCT GCAGATATTC
ATGCAGACCC TGGCGCCGCG CTATCTGGAA ATGGGCGTGG AGCCGGAGGT GCTGCACCGT
ATCGCCAACA TCACCGCAGG CGGGCTCGAC TCGCTGCCGC ATTGCGGCGC GGTGATCGCC
ATGCTGATGA TCATGGGGCT GACCCACAAA CAGGCGTACA AGGACATCTT CGTGATCACC
GTACTCATTC CGGTGGTGGC AGCGTTGCTG TGCATTGCGC TGTTGAGCCT GTGA
 
Protein sequence
MLGNLGLLLG LALLIFMALR GVNIFIAALL CSILVALSNG VAVPKALLEH FPFGPLGAFT 
FAGKFFVLFL CGAIFGKVMA ASQAASSIAQ AITRGLGTQR TLWVAMLVCA VLTYGGVVVF
VVIFTMYPLG ITLMREANLP KRLFCAATAL GAGTFTMTAL PGSPSIHNVI AASALGTDLF
AGAWIGLFAS LVMIGLGMAY LQREWRLARE RGEGFEANVQ DVRMEQLAGT PGSGPHWGMA
LVPIVVVLGI ILLPRVIALS GMVMPGQGAL GQLLAFSQAQ PILWPSLALV IATGVAVVMF
PALRRNTMGL LGQGADDAIM PLLNTAAVIG FGGVVTQTAG FAQFAQWILA VELPPLLSVF
ASVSVVSGIV GSSSGGLQIF MQTLAPRYLE MGVEPEVLHR IANITAGGLD SLPHCGAVIA
MLMIMGLTHK QAYKDIFVIT VLIPVVAALL CIALLSL