| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2534 |
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| Symbol | |
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| ID | 5108001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2794157 |
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| End bp | 2795746 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640503778 |
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| Product | aromatic hydrocarbon degradation membrane protein |
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| Protein accession | YP_001188022 |
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| Protein GI | 146307557 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2067] Long-chain fatty acid transport protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0440745 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.0385583 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCATC TAGCCAAGCT GCAGGCTCTG CTGCTGGTAG GGTTGGGCGC GGCCTGCGTC
CTGCCTGCCC AGGCGCAACT GGCCAACAAC CTGACCATCG GCAACCCCAA GGCCATGGCC
ATGGGCAACG CCGTTACCGC CGATGTCACC GGTATCGATG CGGTGCACTA CAACCCCGCG
GCACTGAGCA AACTCAAGGG GCGGCAGACC ACGGTCAAGC TGCTCAGCGG GGTGATGGAC
ATCCGCGCCA AGTTCGACGC CAAGGAGGAT TACGGCTTCA TGGGTTACGA CGATGACCCG
TTCAAGCATT CCAGCAGCCG TACCCTGACT CCGACCATGT ACCTGCCGGG CGTCGGCGGC
ATGACCGAGC TGCCGGTGCT GGTGGCGCCG CTGGCCGGGC TGTCGATCAA CCCGCCCGGT
TCGAAATTCA CCTTCGCCAC CAACGTCTAC GCGCCCATGG CCTTGGGTTA CTCGCGCGAT
TCGGACAGCG ACCCCGGGCG TTTCCAGGGG CGTCAGGTGT CGCTGCAGCG CATCACCTAC
TTTTCGCCAT CGCTGGCCTA CCAGGTCAAC GACGAGCTGT CGCTGGGCCT GTCCATCGGT
TTCTCCCACC AGGCCGTGGC GCTCAACCAG GATTTTCGCA ACCCCGGCAT GCTCACCGGC
CTGACGCGCA TCCTCAACGA GGCGCTGTGT CTGCCCGGGC TGGAAGAGAT CATGGGACCC
TTCATCAACG TCTGCAGCGG CAAGATCGGC CCCTTCGACT CGCTGGCCAA TCTCGATCTG
GACCTGCAGC AGAGCCTGTC GCCGACCTAC AACCTGGGCA TTCTCTGGGA GCCGACGGAC
TGGTTCGCCT GGGGCGCCAC CTACCAGAGC GAGGCGCGGA TGAATCTGCA GGGCAAGTAC
CGGGTCGACT ACAGCAAGGA CTGGGCGGGG TTCTGGTCCG GGCTGCAGAG TTCGCTGTTC
GGTCAGATCC TCAGCCCGCT GTTTCCCTAC GGGGTCGACG AGGAAAGTGG CAATGCCTCG
CTCAAGCTGA CCTACCCGGA TGCCTTCAGC ACCGGCATCA AGCTGCGCCC CTTGGACAAG
TGGCAGTTCA ACCTGGACCT GCGCTGGGTC GGCTACAGCG ACTGGAACAA TTTCGAGATC
GAGTTCGATC GCGAGCTGGA TCTGCTGCGT ATCGCCAAGA CCTTCGGTGG AGGCAATGCC
ACCGATCGCA GCATCATCCT CGATCGCGGC TACCGCGATA CCTGGAGCTG GGGCGTCGGT
GTGCAGTACG ACGTCAACGA TCGTCTGGCC CTGCGCGCCG GTTACGAGTA CCGCCCCTCG
GCCATCCCCA AGAACAAGGC CGACGTGCTG GCGCCGGTCG GCGATGCCGA CCTCTACGGT
CTCGGCCTGG GCTATCGCTG GGACAAGGAC ACCACCATCG ACGTCGGCTT CAACTATTTC
GTGTCCAGGC AGAGCATTCC TGCCGGCAGC AGCTGCAACG TCAGTTGCGA GGGCCTCGAC
AACCTGGTCT ACAACCCCTA TGCCGGGCTC AATATCGAAA CCACGGTCAA GGCCTACATC
TTCTCCATGA CCTACAGCTC GAGGTTCTGA
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| Protein sequence | MTHLAKLQAL LLVGLGAACV LPAQAQLANN LTIGNPKAMA MGNAVTADVT GIDAVHYNPA
ALSKLKGRQT TVKLLSGVMD IRAKFDAKED YGFMGYDDDP FKHSSSRTLT PTMYLPGVGG
MTELPVLVAP LAGLSINPPG SKFTFATNVY APMALGYSRD SDSDPGRFQG RQVSLQRITY
FSPSLAYQVN DELSLGLSIG FSHQAVALNQ DFRNPGMLTG LTRILNEALC LPGLEEIMGP
FINVCSGKIG PFDSLANLDL DLQQSLSPTY NLGILWEPTD WFAWGATYQS EARMNLQGKY
RVDYSKDWAG FWSGLQSSLF GQILSPLFPY GVDEESGNAS LKLTYPDAFS TGIKLRPLDK
WQFNLDLRWV GYSDWNNFEI EFDRELDLLR IAKTFGGGNA TDRSIILDRG YRDTWSWGVG
VQYDVNDRLA LRAGYEYRPS AIPKNKADVL APVGDADLYG LGLGYRWDKD TTIDVGFNYF
VSRQSIPAGS SCNVSCEGLD NLVYNPYAGL NIETTVKAYI FSMTYSSRF
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