| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2530 |
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| Symbol | |
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| ID | 5107997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2790632 |
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| End bp | 2791651 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640503774 |
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| Product | putative periplasmic protease |
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| Protein accession | YP_001188018 |
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| Protein GI | 146307553 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.581434 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.322286 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAGTTTC TTAGCGAGTA CGCCAGCTTT CTGGCCAAAA CCCTGACCCT GGTGGTCGCC
ATCGTCCTGG TGCTGGTTGC GCTCGCTGCC ACGCGCGGCA AGGGCCGGCG CAGCAGCGGG
CAGTTGCAGG TACAGAAGCT CAACGATTTC TACAGGGATC TGCGCGAGCG TCTCGAGCAG
AGCGTGCTGC ACAAGGAGCA GCTCAAGGTC GCGCGCAAGG CCGAAGCCAA GGCCGCCAAG
CTGAAGAAGA AGGCGCCGGC AAGCAAGCCG CGGGTCTTCG TGCTGGATTT CGATGGTGAC
ATCAAAGCGT CTGCTACCGA CAACCTGCGC CACGAAGTGA CCGCTCTGCT GTCGCTGGCC
AAGGCCGACG ACGAGGTGGT GCTGCGTCTG GAAAGCGGCG GTGGCATGGT GCACAGCTAC
GGGCTGGCAT CCTCGCAACT GGTGCGCATC CGCGACGCCG GCATTCCGCT GACGGTCTGT
GTCGACAAGG TAGCGGCCAG CGGCGGCTAC ATGATGGCCT GTATCGGCCA GAAGATCCTC
GCCGCGCCCT TCGCCATCCT CGGCTCCATC GGTGTGGTCG CGCAGCTGCC CAATGTCCAT
CGTCTGCTGA AGAAGCACGA CATCGACTTC GAAGTTCTCA CGGCGGGCGA GTACAAGCGC
ACCCTGACCA TCTTCGGCGA AAACACCGAG AAGGGCCGAG AGAAGTTTCA GGAAGATCTG
CAGACCACCC ACGATCTGTT CAAGGGCTTC GTCGCCCGTT ATCGCCCGCA GCTGGATATA
GACGCCATCG CCACCGGCGA GGTCTGGCTG GGCATGGCCG CTCAGGAGCG CCTGCTGGTG
GACGAGCTCA AGACCAGCGA CCAGTATCTG GCCGAGCGTG CCGTCGAGGC TGAACTGTTT
CATCTGCATT TCGCTCAGAA AAAGAGCCTG CAGGAGCGCG TCGGCCTGGC TGCCAGCGCG
GCTCTGGATC GCTTCGTGCT GACCTGGCTG AGCAGACTCA ATCAGCAGCG GTTCTGGTAA
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| Protein sequence | MEFLSEYASF LAKTLTLVVA IVLVLVALAA TRGKGRRSSG QLQVQKLNDF YRDLRERLEQ
SVLHKEQLKV ARKAEAKAAK LKKKAPASKP RVFVLDFDGD IKASATDNLR HEVTALLSLA
KADDEVVLRL ESGGGMVHSY GLASSQLVRI RDAGIPLTVC VDKVAASGGY MMACIGQKIL
AAPFAILGSI GVVAQLPNVH RLLKKHDIDF EVLTAGEYKR TLTIFGENTE KGREKFQEDL
QTTHDLFKGF VARYRPQLDI DAIATGEVWL GMAAQERLLV DELKTSDQYL AERAVEAELF
HLHFAQKKSL QERVGLAASA ALDRFVLTWL SRLNQQRFW
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