Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2515 |
Symbol | |
ID | 5107982 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2778571 |
End bp | 2780334 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640503759 |
Product | lipid ABC transporter ATPase/inner membrane protein |
Protein accession | YP_001188003 |
Protein GI | 146307538 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.296095 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTCTC TGCTTTCCTC CCGCCAGCGT GGTGCGATAC GCCTGGCCTG GCGCTTTATC GCGCCTTATC GCGGGCGGGT GCTGGGCGCC TTGCTGGCGC TGCTGTTTAC CGCCGCCATC ACCCTGTCCA TGGGCCAGGG CATCAAGCTG CTGGTGGATC AGGGCCTGGC CACGCAATCG CCGGCTGCGC TGCGTCAGTC CCTGCTGCTG TTCTTCGTGC TGGTGCTGGC TTTGGCGTTC GGCACCTATA CGCGCTTCTA CCTGGTGTCC TGGCTGGGCG AGCGGGTGGT GGCCGATATT CGCCGGCGGG TGTTCGATCA CCTGATCGAG CTGCATCCCG GCTTCTATGA AAGCAATCGC AGCTCGGAGA TCCAGTCGCG GCTGACCGCC GATACCACCT TGCTGCAGTC GGTGATCGGC TCGTCGCTGT CCATGGCCCT GCGCAATCTG ATCATGCTGC TCGGCGGCAG CGTGCTGCTG GTGGTCACCA ACCCCAAATT GAGCGGTATC GTGCTGGCCG CGCTGCCGCT GGTGGTGGCG CCGATCCTGC TGTTCGGCCG CCGTGTGCGG GCGCTGTCGC GGCAGAGCCA GGACCGTGTG GCCGACGTGG GCAGCTATGT CGGCGAGGTG CTGGGGCAGG TCAAGACGGT GCAGGCTTAC AACCATCAGG ACGAGGACAA GCGCCGTTTC GGGCTGTCCG CCGAGGCGGC CTTCGCCGTC GCGCGCAAGC GTGTCGCCCA GCGTGCCTGG CTGATCACCG TGGTCATCGT GCTGGTGCTC GGGGCGGTGG GCGTGATGCT CTGGGTCGGC GGCATGGACG TGATCGCCGG GCGCATTTCC GGCGGAGAGC TGGCGGCCTT CGTCTTCTAC GCCCTGATCG TCGGCTCGTC GTTCGGTACC CTGAGCGAGG TGATCGGTGA GCTGCAGCGC GCAGCCGGAG CGGCCGAGCG CATTGGCGAA CTGCTCCGCG CGCGCAGTCA GATCGTCGCC CCCGCACAGC CGCAGCATCT GGCGCAGCCG GTGCGTGGGC GTATCGAGTT GCAGGGTGTG CGCTTCGCCT ACCCGTCGCG GCCCGACAGC TACGCCATCG ATGGTATCGA TCTGCAGGTG GCAGCGGGCG AGACCCTGGC GCTGGTCGGG CCATCGGGGG CGGGCAAGTC GACGCTGTTC GATCTGCTGC TGCGCTTTTT CGACCCGCAG GCCGGGCGCA TTCTCATCGA CGGTGTGCCG ATCGATCAGC TCGATCCGCG CGAGCTGCGC GCCTGCTTCG CTCTGGTGTC GCAGAATCCG GCGCTGTTCT TCGGCACGGT GGAGGACAAC ATTCGCTACG GCCGGCTCGA CGCCAGCCAG GCGGAGGTGG AGGCTGCCGC GCGTGCGGCG CATGCCCATG AGTTCATCGA GCGTCTGCCG CAGGGTTATC AGAGCCATCT CGGTGAGGCA GGGCTGGGGC TTTCCGGCGG GCAGCGTCAG CGTCTGGCCA TCGCCCGCGC CCTGCTGGCC GATGCGCCGA TCCTGCTGCT CGACGAGGCC ACCAGCGCCC TGGATGCCGA GAGCGAGCAC CTGATCCAGC AGGCGCTTCC TGCGCTGATG AGCGGGCGCA CCACGCTGGT GATCGCGCAC CGGCTGGCCA CCGTCAAGCA GGCCGAACGC ATCGCGGTGA TCGAGCGCGG TCGCCTGGCG GCCATCGGCA GCCATGCCCA GTTGCTCGCC GGCAGCCCGC TCTATGCGCG CCTGGCGCAG CTGCAGTTCG GCGAGGCCGG CTAA
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Protein sequence | MTSLLSSRQR GAIRLAWRFI APYRGRVLGA LLALLFTAAI TLSMGQGIKL LVDQGLATQS PAALRQSLLL FFVLVLALAF GTYTRFYLVS WLGERVVADI RRRVFDHLIE LHPGFYESNR SSEIQSRLTA DTTLLQSVIG SSLSMALRNL IMLLGGSVLL VVTNPKLSGI VLAALPLVVA PILLFGRRVR ALSRQSQDRV ADVGSYVGEV LGQVKTVQAY NHQDEDKRRF GLSAEAAFAV ARKRVAQRAW LITVVIVLVL GAVGVMLWVG GMDVIAGRIS GGELAAFVFY ALIVGSSFGT LSEVIGELQR AAGAAERIGE LLRARSQIVA PAQPQHLAQP VRGRIELQGV RFAYPSRPDS YAIDGIDLQV AAGETLALVG PSGAGKSTLF DLLLRFFDPQ AGRILIDGVP IDQLDPRELR ACFALVSQNP ALFFGTVEDN IRYGRLDASQ AEVEAAARAA HAHEFIERLP QGYQSHLGEA GLGLSGGQRQ RLAIARALLA DAPILLLDEA TSALDAESEH LIQQALPALM SGRTTLVIAH RLATVKQAER IAVIERGRLA AIGSHAQLLA GSPLYARLAQ LQFGEAG
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