| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2505 |
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| Symbol | sdhA |
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| ID | 5107381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2770422 |
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| End bp | 2772194 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640503749 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001187993 |
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| Protein GI | 146307528 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.402685 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAGCA TCCGTACTCT TTCCTATGAC GCCATCATCG TAGGTGGCGG CGGCGCCGGC
ATGCGTGCTG CGCTGCAACT GGCCCAGGGC GGCCACAAGA CTGCCGTGGT CACCAAGGTG
TTCCCGACTC GTTCGCACAC CGTTTCCGCT CAGGGTGGCA TCACCTGCGC CATCGCTTCG
GCCGACCCGA ACGACGATTG GCGCTGGCAC ATGTACGATA CCGTCAAGGG TTCCGACTAC
ATCGGCGACC AGGACGCTAT CGAATACATG TGCTCCGTCG GCCCGGAGGC CGTGTTCGAG
CTCGAGCACA TGGGGCTGCC GTTCTCCCGT ACCGAGCAGG GCCGCATCTA TCAGCGCCCG
TTCGGCGGCC AGTCCAAGGG TCCGGACAAT CCGACCCAGG CTGCCCGTAC CTGCGCCGCT
GCCGACCGTA CCGGTCACGC GCTGCTGCAC ACCCTGTACC AGGCGAACCT GAAGGCTGGC
ACCTCGTTCC TCAACGAGTG GTATGCCGTT GACCTGGTGA AGAACCAGGA CGGCGCCATC
GTCGGCATCA TCGCCATCTG CATCGAGACT GGCGAAACCG TCTACATCCG CTCCAAGGCC
GTGGTTCTGG CCACTGGCGG TGCCGGCCGT ATCTACGCCT CCACCACCAA CGCCCTGATC
AACACTGGTG ACGGCGTGGG CATGGCCCTG CGTGCCGGCG TGCCGGTGCA GGACATCGAA
ATGTGGCAGT TCCACCCGAC CGGTATCGCC GGCGCGGGTG TACTGGTTAC CGAAGGCTGC
CGTGGCGAGG GTGGTTACCT GATCAACGCC CATGGCGAGC GCTTCATGGA GCGTTACGCC
CCGAACGCCA AAGACCTGGC CGGCCGCGAC GTGGTCGCCC GCTCCATGGT CAAGGAAGTG
ATCGCCGGCA ACGGCTGTGG CCCGAACAAG GACCACGTAC TGCTCAAGCT CGATCACCTC
GGCGAAGAAG TGCTGCACAG CCGCCTGCCG GGCATCTGCG AACTGTCCAA GACCTTTGCC
CACGTCGACC CTGTGGTCGC GCCGGTTCCG GTCATCCCGA CCTGCCACTA CATGATGGGC
GGCGTTGCCA CCAACATTCA TGGTCAGGCC ATCACCCAGG ACGTCAACGG CAACGACAAG
ATCATCGAAG GTCTGTTCGC CGTGGGTGAA GTCGCCTGCG TATCGGTGCA CGGTGCCAAC
CGTCTGGGCG GCAACTCGCT GCTGGACCTG GTGGTATTCG GCCGCGCTGC CGGTCTGCAC
CTGGAAAAAG CGCTCAAGGA AGGTGTCGAG GTGCGTGGCG CCAGCGAAAC CGACATCGAG
CAGTCGCTGG CCCGCCTGGC TGGCGTCAAC GAGCGCAGCA CTGGCGAAGA AGTCGCGCCG
CTCAAGCGCG AGCTGCAACA GTGCATGCAA AACTACTTCG GTGTATTCCG TACCGGCGAA
TACATGCAGA AGGGCATCCA ACAACTGGCC GACCTGCGCG AGCGTATCGC CAAGGTGAAA
ATCTCCGACA AGAGCCAGGC GTTCAACACT GCGCGTATCG AAGCGCTGGA ACTGCAAAAC
CTGCTCGAAG TCGCCGAAGC GACCGCGGTC GCGGCCGAGG CTCGTAAAGA GTCCCGTGGC
GCCCACGCTC GTGAAGACTT CGAAGAGCGC GATGACCAGA ACTGGCTGTG CCACTCCCTG
TACTTCCCAG GCGAGAAGCG CGTGGCCAAG CGTGCTGTCA ACTTCGCGCC GAAGACCGTT
CCGGCGTTTG AACCCAAGGT TCGGACTTAT TAA
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| Protein sequence | MASIRTLSYD AIIVGGGGAG MRAALQLAQG GHKTAVVTKV FPTRSHTVSA QGGITCAIAS
ADPNDDWRWH MYDTVKGSDY IGDQDAIEYM CSVGPEAVFE LEHMGLPFSR TEQGRIYQRP
FGGQSKGPDN PTQAARTCAA ADRTGHALLH TLYQANLKAG TSFLNEWYAV DLVKNQDGAI
VGIIAICIET GETVYIRSKA VVLATGGAGR IYASTTNALI NTGDGVGMAL RAGVPVQDIE
MWQFHPTGIA GAGVLVTEGC RGEGGYLINA HGERFMERYA PNAKDLAGRD VVARSMVKEV
IAGNGCGPNK DHVLLKLDHL GEEVLHSRLP GICELSKTFA HVDPVVAPVP VIPTCHYMMG
GVATNIHGQA ITQDVNGNDK IIEGLFAVGE VACVSVHGAN RLGGNSLLDL VVFGRAAGLH
LEKALKEGVE VRGASETDIE QSLARLAGVN ERSTGEEVAP LKRELQQCMQ NYFGVFRTGE
YMQKGIQQLA DLRERIAKVK ISDKSQAFNT ARIEALELQN LLEVAEATAV AAEARKESRG
AHAREDFEER DDQNWLCHSL YFPGEKRVAK RAVNFAPKTV PAFEPKVRTY
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