Gene Pmen_2501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2501 
Symbol 
ID5107377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2763820 
End bp2765256 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content64% 
IMG OID640503745 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_001187989 
Protein GI146307524 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.0977203 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCAGA AATTCGACGT GGTAGTCATC GGTGCCGGCC CTGGTGGCTA CGTAGCCGCC 
ATCAAAGCAG CGCAACTCGG TCTGAAGACT GCCTGCATCG AGAAGTACCA GGGCAAGGAC
GGCAAGATCG CCCTCGGCGG TACCTGCCTG AACGTCGGTT GCATTCCCTC CAAGGCGCTG
CTGGACAGCT CCTGGAAGTA CCATGAAGCG AAAGAAGGCT TCGCCGTCCA CGGTATCGAA
GCCAAGGGCG TCACCATCGA CGTGCCGGCG ATGATCGGTC GCAAGGCCAA CATCGTTAAG
AACCTGACCG GCGGCATCGG TGCGCTGTTC AAGGCCAACG GTGTGACCCT GCTGGAAGGC
CACGGCAAGC TGCTGGCCGG CAAGCAGGTT GAAGTCACCG GTATCGACGG CAAGACCCAG
GTGGTCGAAG GCGCTCACGT GATCATCGCC TCTGGCTCCA AGCCGGTCGA GATCCCCCCG
GCACCGGTCG ATCAGGACGT GATCGTCGAC TCCACCGGTG CCCTGGAATT CCAGAGCGTA
CCGAAGAAGC TGGGCGTCAT CGGCGCGGGC GTGATCGGTC TGGAGCTGGG CTCGGTATGG
GCTCGCCTGG GCTCGGAAGT GACCGTGCTG GAAGCCATGG ACAAGTTCCT TGCCGCTGCC
GACGAGCAGA TCGCCAAGGA AGCCCAGAAG ACCCTGACCA AGCAGGGCCT GGACATCCGC
CTGGGCGCGC GCGTCACCGC CAGCGAAGTC AAGAAGAAGC AGGTTACCGT CACCTTCACC
GACGCCAATG GCGAGCAGAA GATGACCTTC GACAAGCTGA TCGTGGCCGT TGGCCGTCGC
CCGGTGACCA CCGATCTGCT GGCTGCCGAC AGCGGCGTGG ATCTGGACGA GCGTGGCTTC
ATCTTCGTCA ACGACCAGTG CGAAACCAGC GTTCCGGGCG TTTATGCCAT CGGTGACGTG
GTGCGTGGCG CCATGCTCGC GCACAAGGCC TCGGAAGAGG GCGTGATGGT TGCCGAGCGC
ATCGCCGGCC ACAAGGCGCA GATGAACTAC GACCTGATCC CGTCCGTGAT CTACACCCAC
CCGGAAATCG CATGGGTCGG CAAGACCGAG CAGCAGCTGA AGGCCGAAGG CGTTGCCGTC
AACGTCGGTA CCTTCCCGTT CGCGGCCAGC GGCCGCGCCA TGGCTGCCAA CGACACCGGT
GGTCTGGTCA AGGTCATCGC TGACGCCAAC ACCGACCGCG TACTGGGCGT TCACGTGATC
GGCCCAAGCG CTGCCGAACT GGTGCAGCAG GGCGCGATCG GCATGGAATT CGGCACCAGC
GCCGAAGACC TGGGCATGAT GGTCTTCTCC CACCCGACCC TGTCCGAGGC GCTGCACGAA
GCGGCCCTCG CGGTCAACGG TGGCGCGATC CACATCGCCA ACCGCAAGAA GCGCTAA
 
Protein sequence
MTQKFDVVVI GAGPGGYVAA IKAAQLGLKT ACIEKYQGKD GKIALGGTCL NVGCIPSKAL 
LDSSWKYHEA KEGFAVHGIE AKGVTIDVPA MIGRKANIVK NLTGGIGALF KANGVTLLEG
HGKLLAGKQV EVTGIDGKTQ VVEGAHVIIA SGSKPVEIPP APVDQDVIVD STGALEFQSV
PKKLGVIGAG VIGLELGSVW ARLGSEVTVL EAMDKFLAAA DEQIAKEAQK TLTKQGLDIR
LGARVTASEV KKKQVTVTFT DANGEQKMTF DKLIVAVGRR PVTTDLLAAD SGVDLDERGF
IFVNDQCETS VPGVYAIGDV VRGAMLAHKA SEEGVMVAER IAGHKAQMNY DLIPSVIYTH
PEIAWVGKTE QQLKAEGVAV NVGTFPFAAS GRAMAANDTG GLVKVIADAN TDRVLGVHVI
GPSAAELVQQ GAIGMEFGTS AEDLGMMVFS HPTLSEALHE AALAVNGGAI HIANRKKR