Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2464 |
Symbol | |
ID | 5107340 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2727957 |
End bp | 2729624 |
Gene Length | 1668 bp |
Protein Length | 555 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640503708 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_001187952 |
Protein GI | 146307487 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.105323 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCTGATG CAATCCGTTT GCCGCTCGAG CTGTTCTACG AACGTGAAGC AAGGCACCCG AACAAACGCT ACATGGTGCA ACCCCTGGGC GGCGGAAAGC TGCTGGAGCT GAGCTGGGGC GATGTGGGGG AGCAGGCGCG CCGAGCCGCC AACTGGCTGC GTAGCCGCGA ATTACCGCAG GGCAGCCGTA TCGCCATCGT CTCGAAGAAC TGCGCGCACT GGATCATCGC CGACCTGGCG ATCTGGATGG CCGGCCACGT ATCGGTACCG CTCTATCCCA ACCTGACCGC CGACTCCATG CGGCAGGTGC TGGAGCATTC CGAGGCGGCG CTGGCATTCA TCGGCAAGCT CGACGACTGG CAGGCCATGG CCCCGGGGCT GCCACAAGGG CTGCCGACCG TCAGCCTGCC GCTGCATCCT CAGGGCCAGT TCGACTTCAG CTGGGACGAT CTGCAGCGCT GCGCGCCGAT CCAGGACGAC CCCAAGCCCG CGGCCGATCA GCTGGCCACC ATCATCTACA CCTCCGGCAC CACCGGCGCG CCGAAAGGGG TGATGCACAA CTTCTCCAAC TTCGGCTTCG CCGCCAGCAA CGCCATCGCG CTGTTCGGCG TGGGCGAGGA TGACCGCCTG ATCTCCTACC TGCCGTTGTG CCACGTGGCC GAGCGCATGT TCGTCGAGCT GGCGTCGCTG TATGCCGGGC AGACGATCTT TTTCGCCGAA AGCCTGGACA CCTTCCTCGA CGACCTCAAG CGTGCCCGGC CGACCGTAAT GTTCGGCGTA CCGCGGATCT GGACCAAGTT CCAGATGGGG GTGTACGGCA AGATGCCGGC GCACAAGCTC GACCGTCTGC TCAAGCTGCC GATAATCGGC CGCATCGTCG GGCGCAAGGT GCTCGCCGGC CTCGGGCTGG ACGCCATTCG CTATGCGCTG TCCGGCGCCG CCCCGGTGCC CGAGGCGTTG CTTAACTGGT ACCGGCGCCT GGGCATGGAG ATCCAGGAGG TCTATGGCAT GACCGAGAAC TGCGGTTACT CCCATGTCTG CCGGCCCGGC AAGTTCAAGC AGGGCTGGAT CGGCCAGAAC AACCCCGGTG TCGAGGTGCG TATCGCCGAG GATGGCGAAG TCCAGGTGCG CAGTGGCGCC ACCATGCAGG GCTACTACAA AGACCCGGTC AAGACCGCCG AGGCGCTGAC CGCCGACGGC TTCCTGCGTA CCGGCGACAA GGGCGAGCAG GACGCCGAGG GCAATCTGCG CCTGACCGGA CGGATCAAGG AAATCTTCAA GACCAGCAAG GGCAAGTACG TGGCGCCGGC GCCGATCGAG AACCGCATCG GCGAGCATTC GCGCATCGAG CAGGTCTGCG TGGTGGGCGA CGGCTTGCCC CAGCCGATCG CGCTGTGCGT GCTGTCCGAC GTGGGGCGCC AGGAGGCGGC CAACGACGGT CGTGCCGAGC TGGAGAGCAG CCTCAAGGCG CTGGTGGAGC AGGTCAATGA CCGCCTCGAT CATCATGAGC GTCTGCAGGG GCTGGTGCTG GTCCGCGAGG TCTGGGCGGT GGAAAACGGC TTTCTCACAC CCACGCTGAA GATCAAGCGC GCCGTAATCG AAGGTACCTA CGGCGAGCGT TTCGCCGAAT GGCAGCAGCG CAGCGAAGTG GTGCTCTGGC ACGATTGA
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Protein sequence | MADAIRLPLE LFYEREARHP NKRYMVQPLG GGKLLELSWG DVGEQARRAA NWLRSRELPQ GSRIAIVSKN CAHWIIADLA IWMAGHVSVP LYPNLTADSM RQVLEHSEAA LAFIGKLDDW QAMAPGLPQG LPTVSLPLHP QGQFDFSWDD LQRCAPIQDD PKPAADQLAT IIYTSGTTGA PKGVMHNFSN FGFAASNAIA LFGVGEDDRL ISYLPLCHVA ERMFVELASL YAGQTIFFAE SLDTFLDDLK RARPTVMFGV PRIWTKFQMG VYGKMPAHKL DRLLKLPIIG RIVGRKVLAG LGLDAIRYAL SGAAPVPEAL LNWYRRLGME IQEVYGMTEN CGYSHVCRPG KFKQGWIGQN NPGVEVRIAE DGEVQVRSGA TMQGYYKDPV KTAEALTADG FLRTGDKGEQ DAEGNLRLTG RIKEIFKTSK GKYVAPAPIE NRIGEHSRIE QVCVVGDGLP QPIALCVLSD VGRQEAANDG RAELESSLKA LVEQVNDRLD HHERLQGLVL VREVWAVENG FLTPTLKIKR AVIEGTYGER FAEWQQRSEV VLWHD
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