Gene Pmen_2425 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2425 
Symbol 
ID5108265 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2677384 
End bp2678145 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content69% 
IMG OID640503669 
Producttrans-aconitate 2-methyltransferase 
Protein accessionYP_001187913 
Protein GI146307448 
COG category[R] General function prediction only 
COG ID[COG4106] Trans-aconitate methyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.576064 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTGGT CTGCCCAGCA GTACTCCCTG TTCGAACGCC AGCGTACCCG CCCGGTATAC 
GACCTGCTGG CGGCGGTGCC GCGCGAAGGC ATCGAACTGG CCGTTGACCT GGGTTGCGGT
CCCGGCAACT CCACCGCAGT GCTGCAGGCG CATGCGCCGG AGGCGCGGCT GATCGGCATC
GACAACAGCG AAGACATGCT GCGCGCCGCC CGCGAGCGCC TGCCACAGGT CAGCTTCCAG
TTAGCGGATA TCCAGCACTG GCAGGCCGAG GTGGCGCCGC AGCTGATCCT GGCCAACGCC
TCGCTGCAGT GGCTGCCGGA CCATGCCCAG CTCTATCCGG GGCTGCTGAG ACAGCTGGCG
CCGGGCGGCT GGCTGGCGAT CCAGACCCCG GACAACCTGC AGGAGCCGGC CCATCGCCTG
GCCCGCGAGG TGGCCGCCGT GGGGCCATGG GCGGCGCGCA TCGGCGACGT GCGCCATGCC
GAGCGGCACA GCGCACAGAC CTATTACGAC ATCCTCGGCG CCCATGCCAG CGAACTGGAT
ATCTGGCGCA CCACCTACTT CCACGTACTG GACAATGCCG CTGCGGTGGT GGAGTGGTTC
AAGTCGACGG CGCTGCTGCC GTTCCTGCAG CCGCTGGATG CCGCAGAGCA GGCAGCCTTT
CTCGAGCGTT ACCGGGCGGC GATTGCCGAG GCCTATCCGG CGCAGGCCGA TGGCCGGGTG
CTGCTGCCGT TCCCGCGTCT GTTCCTGGTG GCTCGGCGCT AG
 
Protein sequence
MSWSAQQYSL FERQRTRPVY DLLAAVPREG IELAVDLGCG PGNSTAVLQA HAPEARLIGI 
DNSEDMLRAA RERLPQVSFQ LADIQHWQAE VAPQLILANA SLQWLPDHAQ LYPGLLRQLA
PGGWLAIQTP DNLQEPAHRL AREVAAVGPW AARIGDVRHA ERHSAQTYYD ILGAHASELD
IWRTTYFHVL DNAAAVVEWF KSTALLPFLQ PLDAAEQAAF LERYRAAIAE AYPAQADGRV
LLPFPRLFLV ARR