Gene Pmen_2350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2350 
Symbol 
ID5108585 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand- 
Start bp2594745 
End bp2595368 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content65% 
IMG OID640503592 
Producthypothetical protein 
Protein accessionYP_001187840 
Protein GI146307375 
COG category[S] Function unknown 
COG ID[COG2860] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.150454 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.00895518 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAAAAGC TGTTCTATGT CGCCGACCTG TTCGGCGTGG CGGTGTTCGC CATCACTGGC 
GCGCTGATGG CCGGGCGCAA ATCCATGGAC CTGTTCGGCG TGCTGGTGAT GGCCATCGTC 
ACCGCCCTCG GTGGCGGCAC CCTGCGCGAC CTGATCCTGG ACAACCACCC GGTCAGCTGG 
ATTCGTGACG ACACCTACAT CCTGGTGGCT TCGCTGGCAG CGCTGGGCAC GGTGGTCTGG 
GTACGCATGA CCCGGCCGAT TCACGAGAAG GGGCTGCTGA TCGCCGACGC CTTCGGCCTG 
GCCGTGTTCA CCGTCTACGG CACCGAACTG GCGCTGCAGC ACGACACGCC GATCAGCACC 
GCGGTGATCA TGGGCGTGAT GACCGGCGTG GTCGGCGGGG TGATTCGCGA CGTGCTGTGC 
AACGAGATCC CGCTGATCTT CCAGAAGGAA ATCTATGCCA CCGCCTGCAT TGCCGGGGCG 
CTGACCTTCA TCGGTCTGCG CGCGCTGGAT ACGCCGCACT GGCTGGATAC CGGCGCAGCC 
ATGCTGGTGG TGCTGGGCGC GCGCCTGGCG GCGATCCACT GGCATCTGGG ATTGCCGCGC 
TTTCACCTGC TGGACAGGCA TTGA
 
Protein sequence
MEKLFYVADL FGVAVFAITG ALMAGRKSMD LFGVLVMAIV TALGGGTLRD LILDNHPVSW 
IRDDTYILVA SLAALGTVVW VRMTRPIHEK GLLIADAFGL AVFTVYGTEL ALQHDTPIST 
AVIMGVMTGV VGGVIRDVLC NEIPLIFQKE IYATACIAGA LTFIGLRALD TPHWLDTGAA 
MLVVLGARLA AIHWHLGLPR FHLLDRH