| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2334 |
|---|
| Symbol | |
|---|
| ID | 5108569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2577010 |
|---|
| End bp | 2578122 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640503576 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001187824 |
|---|
| Protein GI | 146307359 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5351] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00524729 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0110062 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGC TCAACGCGAC CCGACTGATG GCGGCCTTTA CCCAGGGCCT GGCGCCCGAC
GGCCGCGAAT CGCTGGTGGT GATCGCCAAG GGTACCTTCG ACCTGCCACT GGACGGCCGC
GAGGCGCGCC TGCTCGATAC CCAGCAGCCG CTGCTGATGG CCGACACCTT TCATGGCGAG
CCGGGCCTCA GCGCACCGCT GCAGGAAATG GACTTCGCCC CGAGCAAACC CTTCTGCGAC
GTGCTGGTGC AGGGCAAGGC CCACGCACCG GGCGGCAGGC CGGCAACGCA GATCACCGCC
GGCATTCGCG TCGGCCGCGT CGGCAAGGCC TTCTCGGTAC TCGGCCCCAG GCAGTGGCAG
CCGGGGCTGC TCGGCGTCGC CCCCGGGCTG CCGCAGCCTT TTCTCGAACA GACGATCTCC
TACGCCCAGG CCTTTGGCGG CGCCCATCCC GTCAAGGGCA GCCCCGAGCA GCAGCACGCC
TACCAGGACA ACCCGGCGGG TATCGGCTGG TATCCACGCG GCACGGACAG CGCCGACATG
CTCGGCATGC CGATGCCCAG CACCGAGGAG CTGGGCAAAC CCATCGACAG CCCGCATGGC
GACTTTCGCC CCATGGCGCT CGGCCCGCTT GGCCGTCACT GGCCGCAGCG CGCGGCGTTT
GCCGGGACCT ACGACGAGAC CTGGCTGGCG GACTGTTTTC CCTTCCTACC GGCCGACTTC
GACAATCGCT ACTTCCAAGC CGCGCCGGCC GACCAGCAGA CCGAGCACCT CAAGGGCGGT
GAGGAGGTGC TGCTGCTCAA CCTCACGGCG CAGGAACGCG CGGGCTTTCG CATTCCGCAG
ATGTCCGTGC CGGTAACCTT CTTTCTCAAC AAGGGCGGCC ATGAGACGGT GCATGCCGTG
ATCGATACCC TGCTGATCGA CACCGAGGCG TGCCAGGTGC AGCTGACCTG GCGCATCAGC
CGGCCGCTCA AACGCAACAT GTTCGAAATC GCCCAGGTGC TGGTGGGCAG CATGTCGCGC
GCCTGGTGGC GGGCGCGCGA GCTCGGCAAG GATTACCACG CCGGTCTCGG CAGCCTGGTC
AAGTCCAGAC GCCAGGCGAC GGAGGCCGAC TGA
|
|---|
| Protein sequence | MELLNATRLM AAFTQGLAPD GRESLVVIAK GTFDLPLDGR EARLLDTQQP LLMADTFHGE
PGLSAPLQEM DFAPSKPFCD VLVQGKAHAP GGRPATQITA GIRVGRVGKA FSVLGPRQWQ
PGLLGVAPGL PQPFLEQTIS YAQAFGGAHP VKGSPEQQHA YQDNPAGIGW YPRGTDSADM
LGMPMPSTEE LGKPIDSPHG DFRPMALGPL GRHWPQRAAF AGTYDETWLA DCFPFLPADF
DNRYFQAAPA DQQTEHLKGG EEVLLLNLTA QERAGFRIPQ MSVPVTFFLN KGGHETVHAV
IDTLLIDTEA CQVQLTWRIS RPLKRNMFEI AQVLVGSMSR AWWRARELGK DYHAGLGSLV
KSRRQATEAD
|
|---|
| |