Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2328 |
Symbol | |
ID | 5108563 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2568230 |
End bp | 2568742 |
Gene Length | 513 bp |
Protein Length | 170 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640503570 |
Product | GPW/gp25 family protein |
Protein accession | YP_001187818 |
Protein GI | 146307353 |
COG category | [S] Function unknown |
COG ID | [COG3518] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03357] type VI secretion system lysozyme-related protein |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.570455 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.0349509 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGAGC TGACCCTGCA GGAGCGCTTG CAACCTTCGC TGCTCGATCG TCTCACCGAC GACGATCCCC ACAACCCGAA GGAAAGCGCC GAACGCCGGG TGATGAACCA GAACCAGCTC AAGGCCTCGG TGCTGCGCGA CCTGGCCTGG CTGCTCAATA CCACGGCCCT GCTCGACAGC GAGAGCGCCG CGCAGATGCC GGCCGGCAGC TCGGTGATCA ATTTCGGTCT GCCGCCGCTG TCCGGCCACA CCGCTTCGAG CATCGACGTG CAGCTGGTCG AGAGCGTGCT GACGGAAATC ATCGAGACCT ATGAGCCGCG TCTGCTCAAG GGCTCGCTGC GGGTGCGTGC GCAACTGCAG AGCGACGAGA TGAACCACAA CGCCCTGAGC TTCGAGATCG AGGCCGACCT GTGGGCCGAG CCGGTGCCGC TGCGCCTGCT GCTGTCCACC GATCTCGACC TGGAAACCGG GCACATCAAG GTCGCCCCGG TCGATGGCAG GAGGCGCTCA TGA
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Protein sequence | MAELTLQERL QPSLLDRLTD DDPHNPKESA ERRVMNQNQL KASVLRDLAW LLNTTALLDS ESAAQMPAGS SVINFGLPPL SGHTASSIDV QLVESVLTEI IETYEPRLLK GSLRVRAQLQ SDEMNHNALS FEIEADLWAE PVPLRLLLST DLDLETGHIK VAPVDGRRRS
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