Gene Pmen_2328 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2328 
Symbol 
ID5108563 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2568230 
End bp2568742 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content65% 
IMG OID640503570 
ProductGPW/gp25 family protein 
Protein accessionYP_001187818 
Protein GI146307353 
COG category[S] Function unknown 
COG ID[COG3518] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03357] type VI secretion system lysozyme-related protein 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.570455 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.0349509 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGAGC TGACCCTGCA GGAGCGCTTG CAACCTTCGC TGCTCGATCG TCTCACCGAC 
GACGATCCCC ACAACCCGAA GGAAAGCGCC GAACGCCGGG TGATGAACCA GAACCAGCTC
AAGGCCTCGG TGCTGCGCGA CCTGGCCTGG CTGCTCAATA CCACGGCCCT GCTCGACAGC
GAGAGCGCCG CGCAGATGCC GGCCGGCAGC TCGGTGATCA ATTTCGGTCT GCCGCCGCTG
TCCGGCCACA CCGCTTCGAG CATCGACGTG CAGCTGGTCG AGAGCGTGCT GACGGAAATC
ATCGAGACCT ATGAGCCGCG TCTGCTCAAG GGCTCGCTGC GGGTGCGTGC GCAACTGCAG
AGCGACGAGA TGAACCACAA CGCCCTGAGC TTCGAGATCG AGGCCGACCT GTGGGCCGAG
CCGGTGCCGC TGCGCCTGCT GCTGTCCACC GATCTCGACC TGGAAACCGG GCACATCAAG
GTCGCCCCGG TCGATGGCAG GAGGCGCTCA TGA
 
Protein sequence
MAELTLQERL QPSLLDRLTD DDPHNPKESA ERRVMNQNQL KASVLRDLAW LLNTTALLDS 
ESAAQMPAGS SVINFGLPPL SGHTASSIDV QLVESVLTEI IETYEPRLLK GSLRVRAQLQ
SDEMNHNALS FEIEADLWAE PVPLRLLLST DLDLETGHIK VAPVDGRRRS