Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2318 |
Symbol | |
ID | 5108553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2559054 |
End bp | 2560388 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640503560 |
Product | hypothetical protein |
Protein accession | YP_001187808 |
Protein GI | 146307343 |
COG category | [S] Function unknown |
COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0487552 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.00103904 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCCTGGA ATAACCGAGT GGTGTGGTCC GAGGGAATGT TCCTGCGCCC GCAACACCTG CAGCAGCATG ATCGCTACCT GGAAACGCTG GTCGACAGCC GCTGCCGGCC GATGTTCGCC GGCGGCTGGG GCTTCTCCGA ACTGCAGCTG GATGCGGCGC TGCTGACCCA GGGCAAGCTG GCCATTCTCA GCGCCCGTGG CGTGTTGCCC GACGGAACGC CCTTCGACAT CCCCGGCGAG GACGTGGCGC CGACGCCGCT GATCGTCGAC CCGGAAATGC GCGACAAGCT GATCTACCTC GGCCTGCCGC TCAAGCGCGC CGGCACCCGC GACACCGTGG AGGAGGGCGA AGCCCTCGGC GGCGCCCGCT ACATCAGCCA GGTGCGCGAG GTGCGCGACG ACAACGCGCC GTTCGAGAGC CGCGCGCCGC TGGCCATCGG CGGCAAGGCG CTGCGCCTGC TCACCGAGCG CGATGGCCTC GGCGAGTACG CCTGCATCGG CGTGGTGCGG GTGGTGGAAA AGCGTGCCGA CAACGCCTTG CTGCTGGACG AGAGTTACAT CCCGCCGTTG CTGGACGTCG CCGCCTCGCA GCCGCTGGCG GCCTTTCGCA GCGAACTGCA GGGCCTGCTG CATCAGCGCG GCGAGGCATT GGCGGGCAGG GTGGTGGCCT CCGGTGCCGG CGGCGCCTCG GAAATCGCCG ACTTTCTCCT GCTGCAGCTG GTCAACCGCG CCGAGCCGCT GATCAGCCAC CTGGCCCGGC TCAGCCCGCT GCACCCGGAG GCCTTCTACC GCGAGGCGGT GGCGCTGGCC GGCGAATTCG CCACCTTTTC CAGCAGCGGT AGGCGCCCGG CCGAGTACCC GGCCTACGAG CACGACGACC TGGCGGCCAG CTTCGCCCCG GTGATCCGCG AGCTGCGCCA GGCGTTGTCG ATGGTCATCG ACAGCCGCGC CACGCCGATT CCCATCGTCG AGAAATCCTA CGGCGTGCAC GTGGCCATGC TGGCCGACAA GAACCTGCTG CAGGGCGCCA GCTTCGTCCT GGTGGTGCGC GCCGACGTGC CGGCGGAGAA CCTGCGCAGC CTGTTCCCGC AGCAGGCCAA GGTCGGCTCG GTGGAGCACA TCCGCGACTT GGTCAATCTG CAGCTGCCGG GCATCGCGCT GCTGCCGATG CCGGTGGCAC CACGGCAGAT TCCCTATCAC GCCGGCTCCA GCTACTTCGA GCTGGATCGC GGCAGCGACC ATTGGAAGCA GTTGGCCAAT TCGGGAGGCT TCGCCTTCCA TATCGCTGGC CAGTTCCCCG GCTTGAACCT GGCCTTCTGG GCCATCCGAG GGTAG
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Protein sequence | MSWNNRVVWS EGMFLRPQHL QQHDRYLETL VDSRCRPMFA GGWGFSELQL DAALLTQGKL AILSARGVLP DGTPFDIPGE DVAPTPLIVD PEMRDKLIYL GLPLKRAGTR DTVEEGEALG GARYISQVRE VRDDNAPFES RAPLAIGGKA LRLLTERDGL GEYACIGVVR VVEKRADNAL LLDESYIPPL LDVAASQPLA AFRSELQGLL HQRGEALAGR VVASGAGGAS EIADFLLLQL VNRAEPLISH LARLSPLHPE AFYREAVALA GEFATFSSSG RRPAEYPAYE HDDLAASFAP VIRELRQALS MVIDSRATPI PIVEKSYGVH VAMLADKNLL QGASFVLVVR ADVPAENLRS LFPQQAKVGS VEHIRDLVNL QLPGIALLPM PVAPRQIPYH AGSSYFELDR GSDHWKQLAN SGGFAFHIAG QFPGLNLAFW AIRG
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