Gene Pmen_2318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2318 
Symbol 
ID5108553 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2559054 
End bp2560388 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content69% 
IMG OID640503560 
Producthypothetical protein 
Protein accessionYP_001187808 
Protein GI146307343 
COG category[S] Function unknown 
COG ID[COG3522] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03353] type VI secretion protein, VC_A0114 family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0487552 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00103904 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCCTGGA ATAACCGAGT GGTGTGGTCC GAGGGAATGT TCCTGCGCCC GCAACACCTG 
CAGCAGCATG ATCGCTACCT GGAAACGCTG GTCGACAGCC GCTGCCGGCC GATGTTCGCC
GGCGGCTGGG GCTTCTCCGA ACTGCAGCTG GATGCGGCGC TGCTGACCCA GGGCAAGCTG
GCCATTCTCA GCGCCCGTGG CGTGTTGCCC GACGGAACGC CCTTCGACAT CCCCGGCGAG
GACGTGGCGC CGACGCCGCT GATCGTCGAC CCGGAAATGC GCGACAAGCT GATCTACCTC
GGCCTGCCGC TCAAGCGCGC CGGCACCCGC GACACCGTGG AGGAGGGCGA AGCCCTCGGC
GGCGCCCGCT ACATCAGCCA GGTGCGCGAG GTGCGCGACG ACAACGCGCC GTTCGAGAGC
CGCGCGCCGC TGGCCATCGG CGGCAAGGCG CTGCGCCTGC TCACCGAGCG CGATGGCCTC
GGCGAGTACG CCTGCATCGG CGTGGTGCGG GTGGTGGAAA AGCGTGCCGA CAACGCCTTG
CTGCTGGACG AGAGTTACAT CCCGCCGTTG CTGGACGTCG CCGCCTCGCA GCCGCTGGCG
GCCTTTCGCA GCGAACTGCA GGGCCTGCTG CATCAGCGCG GCGAGGCATT GGCGGGCAGG
GTGGTGGCCT CCGGTGCCGG CGGCGCCTCG GAAATCGCCG ACTTTCTCCT GCTGCAGCTG
GTCAACCGCG CCGAGCCGCT GATCAGCCAC CTGGCCCGGC TCAGCCCGCT GCACCCGGAG
GCCTTCTACC GCGAGGCGGT GGCGCTGGCC GGCGAATTCG CCACCTTTTC CAGCAGCGGT
AGGCGCCCGG CCGAGTACCC GGCCTACGAG CACGACGACC TGGCGGCCAG CTTCGCCCCG
GTGATCCGCG AGCTGCGCCA GGCGTTGTCG ATGGTCATCG ACAGCCGCGC CACGCCGATT
CCCATCGTCG AGAAATCCTA CGGCGTGCAC GTGGCCATGC TGGCCGACAA GAACCTGCTG
CAGGGCGCCA GCTTCGTCCT GGTGGTGCGC GCCGACGTGC CGGCGGAGAA CCTGCGCAGC
CTGTTCCCGC AGCAGGCCAA GGTCGGCTCG GTGGAGCACA TCCGCGACTT GGTCAATCTG
CAGCTGCCGG GCATCGCGCT GCTGCCGATG CCGGTGGCAC CACGGCAGAT TCCCTATCAC
GCCGGCTCCA GCTACTTCGA GCTGGATCGC GGCAGCGACC ATTGGAAGCA GTTGGCCAAT
TCGGGAGGCT TCGCCTTCCA TATCGCTGGC CAGTTCCCCG GCTTGAACCT GGCCTTCTGG
GCCATCCGAG GGTAG
 
Protein sequence
MSWNNRVVWS EGMFLRPQHL QQHDRYLETL VDSRCRPMFA GGWGFSELQL DAALLTQGKL 
AILSARGVLP DGTPFDIPGE DVAPTPLIVD PEMRDKLIYL GLPLKRAGTR DTVEEGEALG
GARYISQVRE VRDDNAPFES RAPLAIGGKA LRLLTERDGL GEYACIGVVR VVEKRADNAL
LLDESYIPPL LDVAASQPLA AFRSELQGLL HQRGEALAGR VVASGAGGAS EIADFLLLQL
VNRAEPLISH LARLSPLHPE AFYREAVALA GEFATFSSSG RRPAEYPAYE HDDLAASFAP
VIRELRQALS MVIDSRATPI PIVEKSYGVH VAMLADKNLL QGASFVLVVR ADVPAENLRS
LFPQQAKVGS VEHIRDLVNL QLPGIALLPM PVAPRQIPYH AGSSYFELDR GSDHWKQLAN
SGGFAFHIAG QFPGLNLAFW AIRG