| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2317 |
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| Symbol | |
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| ID | 5108552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2557686 |
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| End bp | 2559047 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640503559 |
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| Product | hypothetical protein |
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| Protein accession | YP_001187807 |
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| Protein GI | 146307342 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0027894 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.000887894 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATCCGA TCGATGATCC GTTCGGCGGC CCGCCGGGCA ACGGTGGTGG TGGCTCAGGC
CCTGGCAACG ACCGCACCAT GATCATGCCG CGCCCCGGCG GACGGGCGCC TGAGCCGCCC
GCCGGCCAGC CCCGCCCCGC GCCTGCAGCC GGGCCGGCGC CGGCCATGCC TGGCGCGCCC
CTGCCTAGCA GCCTGGCCCA GGGCCTCAAC CCGCTGGAGC GCGCAGCGGC GCCGCTGCTG
GCGCTGCTGA CGCGTTTGCG CAACACCATT TCCCACCCGA TGCCGGCCAG CCTGCGCGCG
CAATTGCTGG CCTATCTGCG TCAGTTCGAG GAACAGGCCA AGGGCGCCGG CGTGCCGCAG
GACGAGGTCA TGCTCAGCCG CTACGTGCTG TGCACCGCGC TGGACGAGGC GGTGCTCAGC
ACGCCCTGGG GCAGTGGCAG CGACTGGGGC AAGCAGAGCC TGCTGATCAC CCTGCACAAC
GAGGCCTGGG GCGGTGAGAA GGTCTTCCAG CTACTCGAGC ACTGCCTGCA GAACGCCCGG
CAGAAGCTGA ACATTCTCGA GCTGCTGTAC CTGTGCATGT GCCTGGGTTT CGAGGGGCGC
TACCGGGTGA TGAACGACGG CCGCAGCCAG CTCGAAGCCC TGCGCGAACG CACCGCAGCG
ACCATCCGCA GCGTCCGTGG CGAGTACGAA CGCGGTCTGT CGCCGCGCTG GCGGGGCGTC
AGCGCGGTGC GCGATCGCCT GTCGCAGTTC GTCCCGCCCT GGGTCGGCAT CGCCGTATGC
CTGGCGCTGC TGCTGCTTCT GCTGTTCGGC CTGCGCCTGA AGCTGGCCAG CGACGCCGAA
CCGGTGTTCC GCAATATCCA CGCGTTGGGC GAGATCCCGG TGCAGACCAT CGACCGGCCG
CCGGTACAGC CCAAGCTGAT CGAACGCCCG CGTCTGGCAC GTTTTCTCGA AGACGACATC
CGCGCCCAGC GCGTCGCCGT GGAGGATGCG GTGGATCGTT CGGTGGTGAC CATCCGTGGC
GACGAGCTGT TCGCTTCCGG CAGCGCCAGC ATTTCCGACA ACCTGCAGCC GCTGCTGCTG
CGCATTGCCG AGGCCATCCG CCAGGTCAAG GGCAACGTGC TGGTCACCGG TCACAGTGAC
GACCGGCCCA TCGCCACCTT GCGTTATCCC TCCAACTGGA AGCTGTCGCA GGACCGTGCG
CAGCAGGTCA TGGACGTCCT GGCCGCGCGC AGCGGCCAGC CGGAACGCTT CACCGCCGAA
GGGCGCAGCG ACACCGAACC GGTGGCCTCC AACGAGAGCG CCGCCGGCCG CGCACGCAAC
CGCCGGGTGG AGATCACCGT ATTCGCGGAG GGCAACCTGT GA
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| Protein sequence | MHPIDDPFGG PPGNGGGGSG PGNDRTMIMP RPGGRAPEPP AGQPRPAPAA GPAPAMPGAP
LPSSLAQGLN PLERAAAPLL ALLTRLRNTI SHPMPASLRA QLLAYLRQFE EQAKGAGVPQ
DEVMLSRYVL CTALDEAVLS TPWGSGSDWG KQSLLITLHN EAWGGEKVFQ LLEHCLQNAR
QKLNILELLY LCMCLGFEGR YRVMNDGRSQ LEALRERTAA TIRSVRGEYE RGLSPRWRGV
SAVRDRLSQF VPPWVGIAVC LALLLLLLFG LRLKLASDAE PVFRNIHALG EIPVQTIDRP
PVQPKLIERP RLARFLEDDI RAQRVAVEDA VDRSVVTIRG DELFASGSAS ISDNLQPLLL
RIAEAIRQVK GNVLVTGHSD DRPIATLRYP SNWKLSQDRA QQVMDVLAAR SGQPERFTAE
GRSDTEPVAS NESAAGRARN RRVEITVFAE GNL
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