| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2309 |
|---|
| Symbol | |
|---|
| ID | 5108544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2545010 |
|---|
| End bp | 2545906 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640503551 |
|---|
| Product | 17 kDa surface antigen |
|---|
| Protein accession | YP_001187799 |
|---|
| Protein GI | 146307334 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.333369 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0000199739 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAATACC CGCAGATCCG CTTCATACGC TCCTCGCTGA TGTTCGCCGG AGCCTTCTCC
ATCCTCTTGC TGGGAGGCTG CGCCAGTGTC GGCGGTGGCG TCAGCTCCAA GGTGGCCAAG
ACCACCCAGG CCAACTACTA CCCGGCCTGT TACGAGCCGG TCAGTCACCT GCGCGCTTCC
GATGCGGCCA TGCAGAAATC GGTGACCACC GGCGCCGTCA CCGGCGGCCT GCTCGGCGGC
CTGGCCGGTG CCCTGAGCGG TGGCGACAAT GCCGGGCGCA ACGCGCTGAT CGGTGCGGCG
GCCGGCGCCC TGGTCGGCGG GGCGGCGGGC TACTACACCG AGCGGCAACG GCAGATCAGC
GATGATCGCC AGCGCATCGC CTCCTACGGC AGCGACTTCG AGCGCAGCAC CATGGACCTG
GATCGCAGCA TCGTCCACGC CAAGGCGGCG CAGGACTGCT ATCAGCGCGA GTTCGAGAAC
CTGCGCGCGG CCCACCGCAA CAAGACCATG AGCGACAGCG AAGGGCGCAA TCGCTTCGCC
GAAATACTCA GCGGCCTGAA GGAAACCAAC GCCCTGCTGG CGGCCGCCGA CGGCCGCACC
GGCGAGGACA TCAACACCTA CACCCAGGCC TACGAGAAGG ACCTGCAGCA GGTCGGTCTG
GAACGCCAGC AGGTGGCGGT GGCCGCCAAG GTGGAAAGCG CGCCGGCCAG CAAGCCGGCA
CCAGCGGCCA AACCGGTGCC GCAGGAAGCG GTGGTGACCG AGCAGAAGAT CCAGAAGGCC
AGCGCCAAGC GCAGCGAGGC GCAGCAGGTC AGCAGTCGCG GCACCGGCAT CATCAGCAGC
GCCTGCAACA ACCCGGACCT GGGCGACTGG GCGCCGGACC CCTGCACCAG CGTCTGA
|
|---|
| Protein sequence | MEYPQIRFIR SSLMFAGAFS ILLLGGCASV GGGVSSKVAK TTQANYYPAC YEPVSHLRAS
DAAMQKSVTT GAVTGGLLGG LAGALSGGDN AGRNALIGAA AGALVGGAAG YYTERQRQIS
DDRQRIASYG SDFERSTMDL DRSIVHAKAA QDCYQREFEN LRAAHRNKTM SDSEGRNRFA
EILSGLKETN ALLAAADGRT GEDINTYTQA YEKDLQQVGL ERQQVAVAAK VESAPASKPA
PAAKPVPQEA VVTEQKIQKA SAKRSEAQQV SSRGTGIISS ACNNPDLGDW APDPCTSV
|
|---|
| |