Gene Pmen_2293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2293 
Symbol 
ID5108528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2527253 
End bp2529391 
Gene Length2139 bp 
Protein Length712 aa 
Translation table11 
GC content68% 
IMG OID640503535 
Productglycogen branching enzyme 
Protein accessionYP_001187783 
Protein GI146307318 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0296] 1,4-alpha-glucan branching enzyme 
TIGRFAM ID[TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.467117 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.000028583 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGTCTGC GCCGGGCCGA GGAGGGTGAT CCGTTCGGTT TCCTCGGCCC GCATGCGCAG 
GGCGACGGCA CGCTGGTGCG CGTATGGCTG CCCGGCGCCG ATGCCGTGGA GCTGATCGAT
CCCGAAGGCC GGCTGCTGGG CGAGATGCAG CGCCGTCACG CCGACGGCCT GTTCGAGCTC
GGGCTGGAGC AGCCCAGCGC CTATCGCCTG CGCATCCACT GGCCCGGCAG CGTGCAGGAG
GTGGAAGACC CCTACGCCTT CGGCCCGATT CTCGGCGAGC TGGATCTGTA CCTGTTCGCC
GAAGGCAACC ACCGCGAGCT GTGGCGTTGT CTCGGCGCGC GCCCCTGCGA ACACGAGGGC
GTACCCGGCG TGAGCTTCGC GGTGTGGGCG CCCAATGCCC GGCGGGTCTC GGTGGTGGGC
GACTTCAACA GCTGGGACGG TCGTCGCCAC CCGATGCGCC TGCGCTACCC GGCCGGGGTG
TGGGAGCTGT TCATTCCGCG CCTGGCCGCT GGCGAGCGCT ACAAGTACGA GATCCTCGGC
CAGCACGGTC TGCTGCCGCA CAAGGCCGAT CCGCTGGCCC AAGCCACCGA GGCGCCGCCG
GCGACCGCCT CGCGCGTACC GCGCGGCGAA GCCTTCGCCT GGCAGGACGA GCACTGGATG
AACGAGCGCG CGCAGCGCCA TCGTCCCGAG GCGCCGCTGG CCATCTACGA GCTGCATGCC
GCCTCCTGGC AGTGGCACGA CGAGCGCACG CCAAGCTGGG ACGAGCTGGC CGATCGGCTG
ATTCCCTACG TGCAGAACCT GGGGTTCACC CATATCGAGC TGATGCCGAT CATGGAGCAC
CCCTTCGGTG GCTCCTGGGG CTATCAGCCG CTGTCGCTGT TCGCGCCCAC CGCGCGCCTC
GGCGAGCCGG AGCGCTTCGC CGCCTTCGTC GACCGCTGCC ACCGCGCCGG CCTCGGCGTG
ATCCTCGACT GGGTGCCGGG ACACTTTCCC AACGACGCCC ACGGTCTGGC CGAGTTCGAC
GGTACCGCAC TGTACGAATA CGCCCATCCC TTCGAGGGCT ACCACCCGGA CTGGAATACC
TGCATCCACA ACCTCGGCCG CAGCGAGGTG CACGGCTTCA TGCTGGCCAG TGCGCTGTAC
TGGCTGCGCG AGTACCACGT CGACGGCCTG CGCGTCGATG CCGTGGCCTC GATGCTGTAT
CGCGACTACT CGCGCGAGGA AGGGCAGTGG ATCCCCAACC GCCATGGCGG GCGCGAGAAC
CTGGAGGCCA TCGAGTTCCT CCAGCACCTC AACGAAGTGG TGCGCAGCGA GGTGCCGGGG
GCGCTGGTGA TCGCCGAGGA GTCCACCGCC TGGCCCGGCG TCAGCCGGCC AGTGAACGAA
GGTGGCCTGG GTTTCAGCCA CAAGTGGAAC ATGGGCTGGA TGAACGACAC CCTGCGCTAC
TTCCAGACCG ACCCGCTGTA CCGCCGCCAT CACCACCAAC AGATCACCTT CGGGCTGCAC
TACGCCTTCT CAGAACGCTA CATCCTGCCC ATCTCCCACG ACGAGGTGGT GCACGGCAAG
CGCTCGCTGA TCGGGCGCAT GCCGGGCGAT CGCTGGCAGC AGTTCGCCAA CCTGCGCCTG
TTCCTCGCCC TGATGTGGAC GCACCCGGGC AAGAAGCTGC TGTTCATGGG CTGCGAGTTC
GGCCAGTGGC GCGAATGGAA CCACGACCAG CAGCTGGACT GGTACCTGCT GCAATATCCC
GAGCATGGCG CGGTACAGGC GCTGCTGGGC GAGCTCAATC GGCTGTATCG CGAGGAAGTC
GCGCTGCACC AGTGGGACGA GCGCCCGGAG GGCTTTCAGT GGCTGATCGG CGACGATGCG
CACAACAGCG TGTTCGCCTG GCTACGCCAT GGCGAGGGTG GGCAACCGCT GCTGGTGGTG
CACAACTGCA CGCCGCAGGT GCGCCACGAT TATCGGGTGG GGGTGCCGCG CGCCGGCGCC
TGGCAGGTGC TGCTCAATAC CGACGAGGGC CGCTGGTGCG GCTCCGGGGC AGGGAGCCAG
GGCACGGTGC ACAGCGATGC GGTGGCCAAC CATGGCCTGC ACGATTCGCT CAACCTGCAG
CTGCCGCCGC TGGCTACCCT GGTGCTGCGC CCTGCATAG
 
Protein sequence
MRLRRAEEGD PFGFLGPHAQ GDGTLVRVWL PGADAVELID PEGRLLGEMQ RRHADGLFEL 
GLEQPSAYRL RIHWPGSVQE VEDPYAFGPI LGELDLYLFA EGNHRELWRC LGARPCEHEG
VPGVSFAVWA PNARRVSVVG DFNSWDGRRH PMRLRYPAGV WELFIPRLAA GERYKYEILG
QHGLLPHKAD PLAQATEAPP ATASRVPRGE AFAWQDEHWM NERAQRHRPE APLAIYELHA
ASWQWHDERT PSWDELADRL IPYVQNLGFT HIELMPIMEH PFGGSWGYQP LSLFAPTARL
GEPERFAAFV DRCHRAGLGV ILDWVPGHFP NDAHGLAEFD GTALYEYAHP FEGYHPDWNT
CIHNLGRSEV HGFMLASALY WLREYHVDGL RVDAVASMLY RDYSREEGQW IPNRHGGREN
LEAIEFLQHL NEVVRSEVPG ALVIAEESTA WPGVSRPVNE GGLGFSHKWN MGWMNDTLRY
FQTDPLYRRH HHQQITFGLH YAFSERYILP ISHDEVVHGK RSLIGRMPGD RWQQFANLRL
FLALMWTHPG KKLLFMGCEF GQWREWNHDQ QLDWYLLQYP EHGAVQALLG ELNRLYREEV
ALHQWDERPE GFQWLIGDDA HNSVFAWLRH GEGGQPLLVV HNCTPQVRHD YRVGVPRAGA
WQVLLNTDEG RWCGSGAGSQ GTVHSDAVAN HGLHDSLNLQ LPPLATLVLR PA