Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2293 |
Symbol | |
ID | 5108528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2527253 |
End bp | 2529391 |
Gene Length | 2139 bp |
Protein Length | 712 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640503535 |
Product | glycogen branching enzyme |
Protein accession | YP_001187783 |
Protein GI | 146307318 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.467117 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.000028583 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGTCTGC GCCGGGCCGA GGAGGGTGAT CCGTTCGGTT TCCTCGGCCC GCATGCGCAG GGCGACGGCA CGCTGGTGCG CGTATGGCTG CCCGGCGCCG ATGCCGTGGA GCTGATCGAT CCCGAAGGCC GGCTGCTGGG CGAGATGCAG CGCCGTCACG CCGACGGCCT GTTCGAGCTC GGGCTGGAGC AGCCCAGCGC CTATCGCCTG CGCATCCACT GGCCCGGCAG CGTGCAGGAG GTGGAAGACC CCTACGCCTT CGGCCCGATT CTCGGCGAGC TGGATCTGTA CCTGTTCGCC GAAGGCAACC ACCGCGAGCT GTGGCGTTGT CTCGGCGCGC GCCCCTGCGA ACACGAGGGC GTACCCGGCG TGAGCTTCGC GGTGTGGGCG CCCAATGCCC GGCGGGTCTC GGTGGTGGGC GACTTCAACA GCTGGGACGG TCGTCGCCAC CCGATGCGCC TGCGCTACCC GGCCGGGGTG TGGGAGCTGT TCATTCCGCG CCTGGCCGCT GGCGAGCGCT ACAAGTACGA GATCCTCGGC CAGCACGGTC TGCTGCCGCA CAAGGCCGAT CCGCTGGCCC AAGCCACCGA GGCGCCGCCG GCGACCGCCT CGCGCGTACC GCGCGGCGAA GCCTTCGCCT GGCAGGACGA GCACTGGATG AACGAGCGCG CGCAGCGCCA TCGTCCCGAG GCGCCGCTGG CCATCTACGA GCTGCATGCC GCCTCCTGGC AGTGGCACGA CGAGCGCACG CCAAGCTGGG ACGAGCTGGC CGATCGGCTG ATTCCCTACG TGCAGAACCT GGGGTTCACC CATATCGAGC TGATGCCGAT CATGGAGCAC CCCTTCGGTG GCTCCTGGGG CTATCAGCCG CTGTCGCTGT TCGCGCCCAC CGCGCGCCTC GGCGAGCCGG AGCGCTTCGC CGCCTTCGTC GACCGCTGCC ACCGCGCCGG CCTCGGCGTG ATCCTCGACT GGGTGCCGGG ACACTTTCCC AACGACGCCC ACGGTCTGGC CGAGTTCGAC GGTACCGCAC TGTACGAATA CGCCCATCCC TTCGAGGGCT ACCACCCGGA CTGGAATACC TGCATCCACA ACCTCGGCCG CAGCGAGGTG CACGGCTTCA TGCTGGCCAG TGCGCTGTAC TGGCTGCGCG AGTACCACGT CGACGGCCTG CGCGTCGATG CCGTGGCCTC GATGCTGTAT CGCGACTACT CGCGCGAGGA AGGGCAGTGG ATCCCCAACC GCCATGGCGG GCGCGAGAAC CTGGAGGCCA TCGAGTTCCT CCAGCACCTC AACGAAGTGG TGCGCAGCGA GGTGCCGGGG GCGCTGGTGA TCGCCGAGGA GTCCACCGCC TGGCCCGGCG TCAGCCGGCC AGTGAACGAA GGTGGCCTGG GTTTCAGCCA CAAGTGGAAC ATGGGCTGGA TGAACGACAC CCTGCGCTAC TTCCAGACCG ACCCGCTGTA CCGCCGCCAT CACCACCAAC AGATCACCTT CGGGCTGCAC TACGCCTTCT CAGAACGCTA CATCCTGCCC ATCTCCCACG ACGAGGTGGT GCACGGCAAG CGCTCGCTGA TCGGGCGCAT GCCGGGCGAT CGCTGGCAGC AGTTCGCCAA CCTGCGCCTG TTCCTCGCCC TGATGTGGAC GCACCCGGGC AAGAAGCTGC TGTTCATGGG CTGCGAGTTC GGCCAGTGGC GCGAATGGAA CCACGACCAG CAGCTGGACT GGTACCTGCT GCAATATCCC GAGCATGGCG CGGTACAGGC GCTGCTGGGC GAGCTCAATC GGCTGTATCG CGAGGAAGTC GCGCTGCACC AGTGGGACGA GCGCCCGGAG GGCTTTCAGT GGCTGATCGG CGACGATGCG CACAACAGCG TGTTCGCCTG GCTACGCCAT GGCGAGGGTG GGCAACCGCT GCTGGTGGTG CACAACTGCA CGCCGCAGGT GCGCCACGAT TATCGGGTGG GGGTGCCGCG CGCCGGCGCC TGGCAGGTGC TGCTCAATAC CGACGAGGGC CGCTGGTGCG GCTCCGGGGC AGGGAGCCAG GGCACGGTGC ACAGCGATGC GGTGGCCAAC CATGGCCTGC ACGATTCGCT CAACCTGCAG CTGCCGCCGC TGGCTACCCT GGTGCTGCGC CCTGCATAG
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Protein sequence | MRLRRAEEGD PFGFLGPHAQ GDGTLVRVWL PGADAVELID PEGRLLGEMQ RRHADGLFEL GLEQPSAYRL RIHWPGSVQE VEDPYAFGPI LGELDLYLFA EGNHRELWRC LGARPCEHEG VPGVSFAVWA PNARRVSVVG DFNSWDGRRH PMRLRYPAGV WELFIPRLAA GERYKYEILG QHGLLPHKAD PLAQATEAPP ATASRVPRGE AFAWQDEHWM NERAQRHRPE APLAIYELHA ASWQWHDERT PSWDELADRL IPYVQNLGFT HIELMPIMEH PFGGSWGYQP LSLFAPTARL GEPERFAAFV DRCHRAGLGV ILDWVPGHFP NDAHGLAEFD GTALYEYAHP FEGYHPDWNT CIHNLGRSEV HGFMLASALY WLREYHVDGL RVDAVASMLY RDYSREEGQW IPNRHGGREN LEAIEFLQHL NEVVRSEVPG ALVIAEESTA WPGVSRPVNE GGLGFSHKWN MGWMNDTLRY FQTDPLYRRH HHQQITFGLH YAFSERYILP ISHDEVVHGK RSLIGRMPGD RWQQFANLRL FLALMWTHPG KKLLFMGCEF GQWREWNHDQ QLDWYLLQYP EHGAVQALLG ELNRLYREEV ALHQWDERPE GFQWLIGDDA HNSVFAWLRH GEGGQPLLVV HNCTPQVRHD YRVGVPRAGA WQVLLNTDEG RWCGSGAGSQ GTVHSDAVAN HGLHDSLNLQ LPPLATLVLR PA
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